Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TM9SF2 (transmembrane 9 superfamily member 2)

Identity

Alias_symbol (synonym)P76
Other alias
HGNC (Hugo) TM9SF2
LocusID (NCBI) 9375
Atlas_Id 74740
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99501374 and ends at 99564048 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID4B (1q42.3) / TM9SF2 (13q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM9SF2   11865
Cards
Entrez_Gene (NCBI)TM9SF2  9375  transmembrane 9 superfamily member 2
AliasesP76
GeneCards (Weizmann)TM9SF2
Ensembl hg19 (Hinxton)ENSG00000125304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125304 [Gene_View]  chr13:99501374-99564048 [Contig_View]  TM9SF2 [Vega]
ICGC DataPortalENSG00000125304
TCGA cBioPortalTM9SF2
AceView (NCBI)TM9SF2
Genatlas (Paris)TM9SF2
WikiGenes9375
SOURCE (Princeton)TM9SF2
Genetics Home Reference (NIH)TM9SF2
Genomic and cartography
GoldenPath hg38 (UCSC)TM9SF2  -     chr13:99501374-99564048 +  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM9SF2  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblTM9SF2 - 13q32.3 [CytoView hg19]  TM9SF2 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBITM9SF2 [Mapview hg19]  TM9SF2 [Mapview hg38]
OMIM604678   
Gene and transcription
Genbank (Entrez)AK093507 AK129798 AK225800 AK290514 AK315210
RefSeq transcript (Entrez)NM_004800
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TM9SF2
Cluster EST : UnigeneHs.607896 [ NCBI ]
CGAP (NCI)Hs.607896
Alternative Splicing GalleryENSG00000125304
Gene ExpressionTM9SF2 [ NCBI-GEO ]   TM9SF2 [ EBI - ARRAY_EXPRESS ]   TM9SF2 [ SEEK ]   TM9SF2 [ MEM ]
Gene Expression Viewer (FireBrowse)TM9SF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9375
GTEX Portal (Tissue expression)TM9SF2
Human Protein AtlasENSG00000125304-TM9SF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99805   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99805  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99805
Splice isoforms : SwissVarQ99805
PhosPhoSitePlusQ99805
Domains : Interpro (EBI)EMP70   
Domain families : Pfam (Sanger)EMP70 (PF02990)   
Domain families : Pfam (NCBI)pfam02990   
Conserved Domain (NCBI)TM9SF2
DMDM Disease mutations9375
Blocks (Seattle)TM9SF2
SuperfamilyQ99805
Human Protein Atlas [tissue]ENSG00000125304-TM9SF2 [tissue]
Peptide AtlasQ99805
HPRD09198
IPIIPI00018415   IPI00902914   
Protein Interaction databases
DIP (DOE-UCLA)Q99805
IntAct (EBI)Q99805
FunCoupENSG00000125304
BioGRIDTM9SF2
STRING (EMBL)TM9SF2
ZODIACTM9SF2
Ontologies - Pathways
QuickGOQ99805
Ontology : AmiGOendosome  integral component of plasma membrane  transport  endosome membrane  extracellular exosome  
Ontology : EGO-EBIendosome  integral component of plasma membrane  transport  endosome membrane  extracellular exosome  
NDEx NetworkTM9SF2
Atlas of Cancer Signalling NetworkTM9SF2
Wikipedia pathwaysTM9SF2
Orthology - Evolution
OrthoDB9375
GeneTree (enSembl)ENSG00000125304
Phylogenetic Trees/Animal Genes : TreeFamTM9SF2
HOVERGENQ99805
HOGENOMQ99805
Homologs : HomoloGeneTM9SF2
Homology/Alignments : Family Browser (UCSC)TM9SF2
Gene fusions - Rearrangements
Tumor Fusion PortalTM9SF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM9SF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM9SF2
dbVarTM9SF2
ClinVarTM9SF2
1000_GenomesTM9SF2 
Exome Variant ServerTM9SF2
ExAC (Exome Aggregation Consortium)ENSG00000125304
GNOMAD BrowserENSG00000125304
Genetic variants : HAPMAP9375
Genomic Variants (DGV)TM9SF2 [DGVbeta]
DECIPHERTM9SF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM9SF2 
Mutations
ICGC Data PortalTM9SF2 
TCGA Data PortalTM9SF2 
Broad Tumor PortalTM9SF2
OASIS PortalTM9SF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM9SF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM9SF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM9SF2
DgiDB (Drug Gene Interaction Database)TM9SF2
DoCM (Curated mutations)TM9SF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM9SF2 (select a term)
intoGenTM9SF2
Cancer3DTM9SF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604678   
Orphanet
DisGeNETTM9SF2
MedgenTM9SF2
Genetic Testing Registry TM9SF2
NextProtQ99805 [Medical]
TSGene9375
GENETestsTM9SF2
Target ValidationTM9SF2
Huge Navigator TM9SF2 [HugePedia]
snp3D : Map Gene to Disease9375
BioCentury BCIQTM9SF2
ClinGenTM9SF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9375
Chemical/Pharm GKB GenePA36566
Clinical trialTM9SF2
Miscellaneous
canSAR (ICR)TM9SF2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM9SF2
EVEXTM9SF2
GoPubMedTM9SF2
iHOPTM9SF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:18:11 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.