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TM9SF3 (transmembrane 9 superfamily member 3)

Identity

Alias (NCBI)EP70-P-iso
SMBP
HGNC (Hugo) TM9SF3
HGNC Alias symbSMBP
LocusID (NCBI) 56889
Atlas_Id 54702
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96518110 and ends at 96587012 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DHFR (5q14.1) / TM9SF3 (10q24.1)POSTN (13q13.3) / TM9SF3 (10q24.1)TM9SF3 (10q24.1) / PIK3AP1 (10q24.1)
TM9SF3 (10q24.1) / SLIT1 (10q24.1)TM9SF3 (10q24.1) / SNRK (3p22.1)TM9SF3 (10q24.1) / TAGLN2 (1q23.2)
TSC22D3 (Xq22.3) / TM9SF3 (10q24.1)TM9SF3 10q24.1 / PIK3AP1 10q24.1TM9SF3 10q24.1 / SLIT1 10q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TM9SF3   21529
Cards
Entrez_Gene (NCBI)TM9SF3    transmembrane 9 superfamily member 3
AliasesEP70-P-iso; SMBP
GeneCards (Weizmann)TM9SF3
Ensembl hg19 (Hinxton)ENSG00000077147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077147 [Gene_View]  ENSG00000077147 [Sequence]  chr10:96518110-96587012 [Contig_View]  TM9SF3 [Vega]
ICGC DataPortalENSG00000077147
TCGA cBioPortalTM9SF3
AceView (NCBI)TM9SF3
Genatlas (Paris)TM9SF3
SOURCE (Princeton)TM9SF3
Genetics Home Reference (NIH)TM9SF3
Genomic and cartography
GoldenPath hg38 (UCSC)TM9SF3  -     chr10:96518110-96587012 -  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM9SF3  -     10q24.1   [Description]    (hg19-Feb_2009)
GoldenPathTM9SF3 - 10q24.1 [CytoView hg19]  TM9SF3 - 10q24.1 [CytoView hg38]
ImmunoBaseENSG00000077147
Genome Data Viewer NCBITM9SF3 [Mapview hg19]  
OMIM616872   
Gene and transcription
Genbank (Entrez)AF116347 AF160213 AF269150 AK000756 AK027438
RefSeq transcript (Entrez)NM_020123
Consensus coding sequences : CCDS (NCBI)TM9SF3
Gene ExpressionTM9SF3 [ NCBI-GEO ]   TM9SF3 [ EBI - ARRAY_EXPRESS ]   TM9SF3 [ SEEK ]   TM9SF3 [ MEM ]
Gene Expression Viewer (FireBrowse)TM9SF3 [ Firebrowse - Broad ]
GenevisibleExpression of TM9SF3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56889
GTEX Portal (Tissue expression)TM9SF3
Human Protein AtlasENSG00000077147-TM9SF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD45
PhosPhoSitePlusQ9HD45
Domains : Interpro (EBI)EMP70   
Domain families : Pfam (Sanger)EMP70 (PF02990)   
Domain families : Pfam (NCBI)pfam02990   
Conserved Domain (NCBI)TM9SF3
SuperfamilyQ9HD45
AlphaFold pdb e-kbQ9HD45   
Human Protein Atlas [tissue]ENSG00000077147-TM9SF3 [tissue]
HPRD18073
Protein Interaction databases
DIP (DOE-UCLA)Q9HD45
IntAct (EBI)Q9HD45
BioGRIDTM9SF3
STRING (EMBL)TM9SF3
ZODIACTM9SF3
Ontologies - Pathways
QuickGOQ9HD45
Ontology : AmiGOmembrane  integral component of membrane  protein localization to membrane  
Ontology : EGO-EBImembrane  integral component of membrane  protein localization to membrane  
NDEx NetworkTM9SF3
Atlas of Cancer Signalling NetworkTM9SF3
Wikipedia pathwaysTM9SF3
Orthology - Evolution
OrthoDB56889
GeneTree (enSembl)ENSG00000077147
Phylogenetic Trees/Animal Genes : TreeFamTM9SF3
Homologs : HomoloGeneTM9SF3
Homology/Alignments : Family Browser (UCSC)TM9SF3
Gene fusions - Rearrangements
Fusion : MitelmanPOSTN/TM9SF3 [13q13.3/10q24.1]  
Fusion : MitelmanTM9SF3/PIK3AP1 [10q24.1/10q24.1]  
Fusion : MitelmanTM9SF3/SLIT1 [10q24.1/10q24.1]  
Fusion : QuiverTM9SF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM9SF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM9SF3
dbVarTM9SF3
ClinVarTM9SF3
MonarchTM9SF3
1000_GenomesTM9SF3 
Exome Variant ServerTM9SF3
GNOMAD BrowserENSG00000077147
Varsome BrowserTM9SF3
ACMGTM9SF3 variants
VarityQ9HD45
Genomic Variants (DGV)TM9SF3 [DGVbeta]
DECIPHERTM9SF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM9SF3 
Mutations
ICGC Data PortalTM9SF3 
TCGA Data PortalTM9SF3 
Broad Tumor PortalTM9SF3
OASIS PortalTM9SF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM9SF3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTM9SF3
Mutations and Diseases : HGMDTM9SF3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTM9SF3
DgiDB (Drug Gene Interaction Database)TM9SF3
DoCM (Curated mutations)TM9SF3
CIViC (Clinical Interpretations of Variants in Cancer)TM9SF3
Cancer3DTM9SF3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616872   
Orphanet
DisGeNETTM9SF3
MedgenTM9SF3
Genetic Testing Registry TM9SF3
NextProtQ9HD45 [Medical]
GENETestsTM9SF3
Target ValidationTM9SF3
Huge Navigator TM9SF3 [HugePedia]
ClinGenTM9SF3
Clinical trials, drugs, therapy
MyCancerGenomeTM9SF3
Protein Interactions : CTDTM9SF3
Pharm GKB GenePA144596264
PharosQ9HD45
Clinical trialTM9SF3
Miscellaneous
canSAR (ICR)TM9SF3
HarmonizomeTM9SF3
DataMed IndexTM9SF3
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTM9SF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:35:18 CEST 2021

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