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TM9SF3 (transmembrane 9 superfamily member 3)

Identity

Alias_symbol (synonym)SMBP
Other aliasEP70-P-iso
HGNC (Hugo) TM9SF3
LocusID (NCBI) 56889
Atlas_Id 54702
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 98277867 and ends at 98346809 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DHFR (5q14.1) / TM9SF3 (10q24.1)POSTN (13q13.3) / TM9SF3 (10q24.1)TM9SF3 (10q24.1) / PIK3AP1 (10q24.1)
TM9SF3 (10q24.1) / SLIT1 (10q24.1)TM9SF3 (10q24.1) / SNRK (3p22.1)TM9SF3 (10q24.1) / TAGLN2 (1q23.2)
TSC22D3 (Xq22.3) / TM9SF3 (10q24.1)TM9SF3 10q24.1 / PIK3AP1 10q24.1TM9SF3 10q24.1 / SLIT1 10q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TM9SF3   21529
Cards
Entrez_Gene (NCBI)TM9SF3  56889  transmembrane 9 superfamily member 3
AliasesEP70-P-iso; SMBP
GeneCards (Weizmann)TM9SF3
Ensembl hg19 (Hinxton)ENSG00000077147 [Gene_View]  chr10:98277867-98346809 [Contig_View]  TM9SF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000077147 [Gene_View]  chr10:98277867-98346809 [Contig_View]  TM9SF3 [Vega]
ICGC DataPortalENSG00000077147
TCGA cBioPortalTM9SF3
AceView (NCBI)TM9SF3
Genatlas (Paris)TM9SF3
WikiGenes56889
SOURCE (Princeton)TM9SF3
Genetics Home Reference (NIH)TM9SF3
Genomic and cartography
GoldenPath hg19 (UCSC)TM9SF3  -     chr10:98277867-98346809 -  10q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TM9SF3  -     10q24.1   [Description]    (hg38-Dec_2013)
EnsemblTM9SF3 - 10q24.1 [CytoView hg19]  TM9SF3 - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBITM9SF3 [Mapview hg19]  TM9SF3 [Mapview hg38]
OMIM616872   
Gene and transcription
Genbank (Entrez)AF116347 AF160213 AF269150 AK000756 AK027438
RefSeq transcript (Entrez)NM_020123
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)TM9SF3
Cluster EST : UnigeneHs.500674 [ NCBI ]
CGAP (NCI)Hs.500674
Alternative Splicing GalleryENSG00000077147
Gene ExpressionTM9SF3 [ NCBI-GEO ]   TM9SF3 [ EBI - ARRAY_EXPRESS ]   TM9SF3 [ SEEK ]   TM9SF3 [ MEM ]
Gene Expression Viewer (FireBrowse)TM9SF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56889
GTEX Portal (Tissue expression)TM9SF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD45
Splice isoforms : SwissVarQ9HD45
PhosPhoSitePlusQ9HD45
Domains : Interpro (EBI)EMP70   
Domain families : Pfam (Sanger)EMP70 (PF02990)   
Domain families : Pfam (NCBI)pfam02990   
Conserved Domain (NCBI)TM9SF3
DMDM Disease mutations56889
Blocks (Seattle)TM9SF3
SuperfamilyQ9HD45
Human Protein AtlasENSG00000077147
Peptide AtlasQ9HD45
HPRD18073
IPIIPI00030847   IPI00644458   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD45
IntAct (EBI)Q9HD45
FunCoupENSG00000077147
BioGRIDTM9SF3
STRING (EMBL)TM9SF3
ZODIACTM9SF3
Ontologies - Pathways
QuickGOQ9HD45
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTM9SF3
Atlas of Cancer Signalling NetworkTM9SF3
Wikipedia pathwaysTM9SF3
Orthology - Evolution
OrthoDB56889
GeneTree (enSembl)ENSG00000077147
Phylogenetic Trees/Animal Genes : TreeFamTM9SF3
HOVERGENQ9HD45
HOGENOMQ9HD45
Homologs : HomoloGeneTM9SF3
Homology/Alignments : Family Browser (UCSC)TM9SF3
Gene fusions - Rearrangements
Fusion : MitelmanPOSTN/TM9SF3 [13q13.3/10q24.1]  [t(3;10)(q13;q24)]  
Fusion : MitelmanTM9SF3/PIK3AP1 [10q24.1/10q24.1]  [t(10;10)(q24;q24)]  
Fusion : MitelmanTM9SF3/SLIT1 [10q24.1/10q24.1]  [t(10;10)(q24;q24)]  
Fusion: TCGATM9SF3 10q24.1 PIK3AP1 10q24.1 BRCA
Fusion: TCGATM9SF3 10q24.1 SLIT1 10q24.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM9SF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM9SF3
dbVarTM9SF3
ClinVarTM9SF3
1000_GenomesTM9SF3 
Exome Variant ServerTM9SF3
ExAC (Exome Aggregation Consortium)TM9SF3 (select the gene name)
Genetic variants : HAPMAP56889
Genomic Variants (DGV)TM9SF3 [DGVbeta]
DECIPHER (Syndromes)10:98277867-98346809  ENSG00000077147
CONAN: Copy Number AnalysisTM9SF3 
Mutations
ICGC Data PortalTM9SF3 
TCGA Data PortalTM9SF3 
Broad Tumor PortalTM9SF3
OASIS PortalTM9SF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM9SF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTM9SF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TM9SF3
DgiDB (Drug Gene Interaction Database)TM9SF3
DoCM (Curated mutations)TM9SF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TM9SF3 (select a term)
intoGenTM9SF3
Cancer3DTM9SF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616872   
Orphanet
MedgenTM9SF3
Genetic Testing Registry TM9SF3
NextProtQ9HD45 [Medical]
TSGene56889
GENETestsTM9SF3
Huge Navigator TM9SF3 [HugePedia]
snp3D : Map Gene to Disease56889
BioCentury BCIQTM9SF3
ClinGenTM9SF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56889
Chemical/Pharm GKB GenePA144596264
Clinical trialTM9SF3
Miscellaneous
canSAR (ICR)TM9SF3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTM9SF3
EVEXTM9SF3
GoPubMedTM9SF3
iHOPTM9SF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:36 CEST 2017

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