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TM9SF4 (transmembrane 9 superfamily member 4)

Identity

Alias (NCBI)dJ836N17.2
HGNC (Hugo) TM9SF4
HGNC Alias symbKIAA0255
dJ836N17.2
LocusID (NCBI) 9777
Atlas_Id 51410
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 32109714 and ends at 32167256 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASXL1 (20q11.21) / TM9SF4 (20q11.21)CALD1 (7q33) / TM9SF4 (20q11.21)MAPRE1 (20q11.21) / TM9SF4 (20q11.21)
POFUT1 (20q11.21) / TM9SF4 (20q11.21)RPL8 (8q24.3) / TM9SF4 (20q11.21)TM9SF4 (20q11.21) / ARPC1B (7q22.1)
TM9SF4 (20q11.21) / CALD1 (7q33)TM9SF4 (20q11.21) / CRTC3 (15q26.1)TM9SF4 (20q11.21) / EYA2 (20q13.12)
TM9SF4 (20q11.21) / HM13 (20q11.21)TM9SF4 (20q11.21) / NKTR (3p22.1)TM9SF4 (20q11.21) / OSER1 (20q13.12)
TM9SF4 (20q11.21) / TM9SF4 (20q11.21)TM9SF4 (20q11.21) / TPX2 (20q11.21)TM9SF4 (20q11.21) / TUBA4A (2q35)
TM9SF4 (20q11.21) / ZNF423 (16q12.1)ASXL1 20q11.21 / TM9SF4 20q11.21MAPRE1 20q11.21 / TM9SF4 20q11.21
TM9SF4 20q11.21 / EYA2 20q13.12TM9SF4 20q11.21 / HM13 20q11.21TM9SF4 20q11.21 / TPX2 20q11.21
TM9SF4 20q11.21 / ZNF423 16q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TM9SF4   30797
Cards
Entrez_Gene (NCBI)TM9SF4    transmembrane 9 superfamily member 4
AliasesdJ836N17.2
GeneCards (Weizmann)TM9SF4
Ensembl hg19 (Hinxton)ENSG00000101337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101337 [Gene_View]  ENSG00000101337 [Sequence]  chr20:32109714-32167256 [Contig_View]  TM9SF4 [Vega]
ICGC DataPortalENSG00000101337
TCGA cBioPortalTM9SF4
AceView (NCBI)TM9SF4
Genatlas (Paris)TM9SF4
SOURCE (Princeton)TM9SF4
Genetics Home Reference (NIH)TM9SF4
Genomic and cartography
GoldenPath hg38 (UCSC)TM9SF4  -     chr20:32109714-32167256 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TM9SF4  -     20q11.21   [Description]    (hg19-Feb_2009)
GoldenPathTM9SF4 - 20q11.21 [CytoView hg19]  TM9SF4 - 20q11.21 [CytoView hg38]
ImmunoBaseENSG00000101337
Genome Data Viewer NCBITM9SF4 [Mapview hg19]  
OMIM617727   
Gene and transcription
Genbank (Entrez)AK124411 AK126534 AK294980 AK296500 AK302439
RefSeq transcript (Entrez)NM_001363731 NM_014742
Consensus coding sequences : CCDS (NCBI)TM9SF4
Gene ExpressionTM9SF4 [ NCBI-GEO ]   TM9SF4 [ EBI - ARRAY_EXPRESS ]   TM9SF4 [ SEEK ]   TM9SF4 [ MEM ]
Gene Expression Viewer (FireBrowse)TM9SF4 [ Firebrowse - Broad ]
GenevisibleExpression of TM9SF4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9777
GTEX Portal (Tissue expression)TM9SF4
Human Protein AtlasENSG00000101337-TM9SF4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92544   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92544  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92544
PhosPhoSitePlusQ92544
Domains : Interpro (EBI)EMP70   
Domain families : Pfam (Sanger)EMP70 (PF02990)   
Domain families : Pfam (NCBI)pfam02990   
Conserved Domain (NCBI)TM9SF4
SuperfamilyQ92544
AlphaFold pdb e-kbQ92544   
Human Protein Atlas [tissue]ENSG00000101337-TM9SF4 [tissue]
HPRD15514
Protein Interaction databases
DIP (DOE-UCLA)Q92544
IntAct (EBI)Q92544
BioGRIDTM9SF4
STRING (EMBL)TM9SF4
ZODIACTM9SF4
Ontologies - Pathways
QuickGOQ92544
Ontology : AmiGOresponse to hypoxia  protein binding  early endosome  Golgi apparatus  phagocytosis  cell adhesion  membrane  integral component of membrane  regulation of intracellular pH  vacuolar proton-transporting V-type ATPase complex assembly  positive regulation of protein exit from endoplasmic reticulum  protein localization to membrane  positive regulation of protein localization to cell surface  
Ontology : EGO-EBIresponse to hypoxia  protein binding  early endosome  Golgi apparatus  phagocytosis  cell adhesion  membrane  integral component of membrane  regulation of intracellular pH  vacuolar proton-transporting V-type ATPase complex assembly  positive regulation of protein exit from endoplasmic reticulum  protein localization to membrane  positive regulation of protein localization to cell surface  
NDEx NetworkTM9SF4
Atlas of Cancer Signalling NetworkTM9SF4
Wikipedia pathwaysTM9SF4
Orthology - Evolution
OrthoDB9777
GeneTree (enSembl)ENSG00000101337
Phylogenetic Trees/Animal Genes : TreeFamTM9SF4
Homologs : HomoloGeneTM9SF4
Homology/Alignments : Family Browser (UCSC)TM9SF4
Gene fusions - Rearrangements
Fusion : MitelmanASXL1/TM9SF4 [20q11.21/20q11.21]  
Fusion : MitelmanMAPRE1/TM9SF4 [20q11.21/20q11.21]  
Fusion : MitelmanTM9SF4/EYA2 [20q11.21/20q13.12]  
Fusion : MitelmanTM9SF4/HM13 [20q11.21/20q11.21]  
Fusion : MitelmanTM9SF4/TPX2 [20q11.21/20q11.21]  
Fusion : MitelmanTM9SF4/ZNF423 [20q11.21/16q12.1]  
Fusion : QuiverTM9SF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTM9SF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TM9SF4
dbVarTM9SF4
ClinVarTM9SF4
MonarchTM9SF4
1000_GenomesTM9SF4 
Exome Variant ServerTM9SF4
GNOMAD BrowserENSG00000101337
Varsome BrowserTM9SF4
ACMGTM9SF4 variants
VarityQ92544
Genomic Variants (DGV)TM9SF4 [DGVbeta]
DECIPHERTM9SF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTM9SF4 
Mutations
ICGC Data PortalTM9SF4 
TCGA Data PortalTM9SF4 
Broad Tumor PortalTM9SF4
OASIS PortalTM9SF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTM9SF4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTM9SF4
Mutations and Diseases : HGMDTM9SF4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTM9SF4
DgiDB (Drug Gene Interaction Database)TM9SF4
DoCM (Curated mutations)TM9SF4
CIViC (Clinical Interpretations of Variants in Cancer)TM9SF4
Cancer3DTM9SF4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617727   
Orphanet
DisGeNETTM9SF4
MedgenTM9SF4
Genetic Testing Registry TM9SF4
NextProtQ92544 [Medical]
GENETestsTM9SF4
Target ValidationTM9SF4
Huge Navigator TM9SF4 [HugePedia]
ClinGenTM9SF4
Clinical trials, drugs, therapy
MyCancerGenomeTM9SF4
Protein Interactions : CTDTM9SF4
Pharm GKB GenePA134937613
PharosQ92544
Clinical trialTM9SF4
Miscellaneous
canSAR (ICR)TM9SF4
HarmonizomeTM9SF4
DataMed IndexTM9SF4
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTM9SF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:18 CEST 2021

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