Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMA16 (translation machinery associated 16 homolog)

Identity

Alias_namesC4orf43
chromosome 4 open reading frame 43
translation machinery associated 16 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ11184
Other alias
HGNC (Hugo) TMA16
LocusID (NCBI) 55319
Atlas_Id 74741
Location 4q32.2  [Link to chromosome band 4q32]
Location_base_pair Starts at 163494521 and ends at 163520539 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMA16   25638
Cards
Entrez_Gene (NCBI)TMA16  55319  translation machinery associated 16 homolog
AliasesC4orf43
GeneCards (Weizmann)TMA16
Ensembl hg19 (Hinxton)ENSG00000198498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198498 [Gene_View]  chr4:163494521-163520539 [Contig_View]  TMA16 [Vega]
ICGC DataPortalENSG00000198498
TCGA cBioPortalTMA16
AceView (NCBI)TMA16
Genatlas (Paris)TMA16
WikiGenes55319
SOURCE (Princeton)TMA16
Genetics Home Reference (NIH)TMA16
Genomic and cartography
GoldenPath hg38 (UCSC)TMA16  -     chr4:163494521-163520539 +  4q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMA16  -     4q32.2   [Description]    (hg19-Feb_2009)
EnsemblTMA16 - 4q32.2 [CytoView hg19]  TMA16 - 4q32.2 [CytoView hg38]
Mapping of homologs : NCBITMA16 [Mapview hg19]  TMA16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA772718 AK002046 AK298235 AW518118 BC005204
RefSeq transcript (Entrez)NM_018352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMA16
Cluster EST : UnigeneHs.267446 [ NCBI ]
CGAP (NCI)Hs.267446
Alternative Splicing GalleryENSG00000198498
Gene ExpressionTMA16 [ NCBI-GEO ]   TMA16 [ EBI - ARRAY_EXPRESS ]   TMA16 [ SEEK ]   TMA16 [ MEM ]
Gene Expression Viewer (FireBrowse)TMA16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55319
GTEX Portal (Tissue expression)TMA16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EY4
Splice isoforms : SwissVarQ96EY4
PhosPhoSitePlusQ96EY4
Domains : Interpro (EBI)Tma16   
Domain families : Pfam (Sanger)Tma16 (PF11176)   
Domain families : Pfam (NCBI)pfam11176   
Conserved Domain (NCBI)TMA16
DMDM Disease mutations55319
Blocks (Seattle)TMA16
SuperfamilyQ96EY4
Human Protein AtlasENSG00000198498
Peptide AtlasQ96EY4
HPRD07739
IPIIPI00019962   IPI00968155   IPI00963910   IPI00966334   IPI00965954   
Protein Interaction databases
DIP (DOE-UCLA)Q96EY4
IntAct (EBI)Q96EY4
FunCoupENSG00000198498
BioGRIDTMA16
STRING (EMBL)TMA16
ZODIACTMA16
Ontologies - Pathways
QuickGOQ96EY4
Ontology : AmiGOprotein binding  nucleus  nucleolus  ribosome  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  ribosome  
NDEx NetworkTMA16
Atlas of Cancer Signalling NetworkTMA16
Wikipedia pathwaysTMA16
Orthology - Evolution
OrthoDB55319
GeneTree (enSembl)ENSG00000198498
Phylogenetic Trees/Animal Genes : TreeFamTMA16
HOVERGENQ96EY4
HOGENOMQ96EY4
Homologs : HomoloGeneTMA16
Homology/Alignments : Family Browser (UCSC)TMA16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMA16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMA16
dbVarTMA16
ClinVarTMA16
1000_GenomesTMA16 
Exome Variant ServerTMA16
ExAC (Exome Aggregation Consortium)TMA16 (select the gene name)
Genetic variants : HAPMAP55319
Genomic Variants (DGV)TMA16 [DGVbeta]
DECIPHERTMA16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMA16 
Mutations
ICGC Data PortalTMA16 
TCGA Data PortalTMA16 
Broad Tumor PortalTMA16
OASIS PortalTMA16 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMA16
BioMutasearch TMA16
DgiDB (Drug Gene Interaction Database)TMA16
DoCM (Curated mutations)TMA16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMA16 (select a term)
intoGenTMA16
Cancer3DTMA16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMA16
Genetic Testing Registry TMA16
NextProtQ96EY4 [Medical]
TSGene55319
GENETestsTMA16
Target ValidationTMA16
Huge Navigator TMA16 [HugePedia]
snp3D : Map Gene to Disease55319
BioCentury BCIQTMA16
ClinGenTMA16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55319
Chemical/Pharm GKB GenePA162379923
Clinical trialTMA16
Miscellaneous
canSAR (ICR)TMA16 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMA16
EVEXTMA16
GoPubMedTMA16
iHOPTMA16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.