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TMA16 (translation machinery associated 16 homolog)

Identity

Alias (NCBI)C4orf43
HGNC (Hugo) TMA16
HGNC Alias symbFLJ11184
HGNC Previous nameC4orf43
HGNC Previous namechromosome 4 open reading frame 43
 translation machinery associated 16 homolog (S. cerevisiae)
LocusID (NCBI) 55319
Atlas_Id 74741
Location 4q32.2  [Link to chromosome band 4q32]
Location_base_pair Starts at 163494690 and ends at 163520539 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMA16   25638
Cards
Entrez_Gene (NCBI)TMA16    translation machinery associated 16 homolog
AliasesC4orf43
GeneCards (Weizmann)TMA16
Ensembl hg19 (Hinxton)ENSG00000198498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198498 [Gene_View]  ENSG00000198498 [Sequence]  chr4:163494690-163520539 [Contig_View]  TMA16 [Vega]
ICGC DataPortalENSG00000198498
TCGA cBioPortalTMA16
AceView (NCBI)TMA16
Genatlas (Paris)TMA16
SOURCE (Princeton)TMA16
Genetics Home Reference (NIH)TMA16
Genomic and cartography
GoldenPath hg38 (UCSC)TMA16  -     chr4:163494690-163520539 +  4q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMA16  -     4q32.2   [Description]    (hg19-Feb_2009)
GoldenPathTMA16 - 4q32.2 [CytoView hg19]  TMA16 - 4q32.2 [CytoView hg38]
ImmunoBaseENSG00000198498
Genome Data Viewer NCBITMA16 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA772718 AK002046 AK298235 AW518118 BC005204
RefSeq transcript (Entrez)NM_018352
Consensus coding sequences : CCDS (NCBI)TMA16
Gene ExpressionTMA16 [ NCBI-GEO ]   TMA16 [ EBI - ARRAY_EXPRESS ]   TMA16 [ SEEK ]   TMA16 [ MEM ]
Gene Expression Viewer (FireBrowse)TMA16 [ Firebrowse - Broad ]
GenevisibleExpression of TMA16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55319
GTEX Portal (Tissue expression)TMA16
Human Protein AtlasENSG00000198498-TMA16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EY4
PhosPhoSitePlusQ96EY4
Domains : Interpro (EBI)Tma16    Tma16_sf   
Domain families : Pfam (Sanger)Tma16 (PF11176)   
Domain families : Pfam (NCBI)pfam11176   
Conserved Domain (NCBI)TMA16
PDB (RSDB)6LSS    6LU8   
PDB Europe6LSS    6LU8   
PDB (PDBSum)6LSS    6LU8   
PDB (IMB)6LSS    6LU8   
Structural Biology KnowledgeBase6LSS    6LU8   
SCOP (Structural Classification of Proteins)6LSS    6LU8   
CATH (Classification of proteins structures)6LSS    6LU8   
SuperfamilyQ96EY4
AlphaFold pdb e-kbQ96EY4   
Human Protein Atlas [tissue]ENSG00000198498-TMA16 [tissue]
HPRD07739
Protein Interaction databases
DIP (DOE-UCLA)Q96EY4
IntAct (EBI)Q96EY4
BioGRIDTMA16
STRING (EMBL)TMA16
ZODIACTMA16
Ontologies - Pathways
QuickGOQ96EY4
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  nucleolus  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  nucleolus  
NDEx NetworkTMA16
Atlas of Cancer Signalling NetworkTMA16
Wikipedia pathwaysTMA16
Orthology - Evolution
OrthoDB55319
GeneTree (enSembl)ENSG00000198498
Phylogenetic Trees/Animal Genes : TreeFamTMA16
Homologs : HomoloGeneTMA16
Homology/Alignments : Family Browser (UCSC)TMA16
Gene fusions - Rearrangements
Fusion : QuiverTMA16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMA16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMA16
dbVarTMA16
ClinVarTMA16
MonarchTMA16
1000_GenomesTMA16 
Exome Variant ServerTMA16
GNOMAD BrowserENSG00000198498
Varsome BrowserTMA16
ACMGTMA16 variants
VarityQ96EY4
Genomic Variants (DGV)TMA16 [DGVbeta]
DECIPHERTMA16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMA16 
Mutations
ICGC Data PortalTMA16 
TCGA Data PortalTMA16 
Broad Tumor PortalTMA16
OASIS PortalTMA16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMA16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMA16
Mutations and Diseases : HGMDTMA16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMA16
DgiDB (Drug Gene Interaction Database)TMA16
DoCM (Curated mutations)TMA16
CIViC (Clinical Interpretations of Variants in Cancer)TMA16
Cancer3DTMA16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMA16
MedgenTMA16
Genetic Testing Registry TMA16
NextProtQ96EY4 [Medical]
GENETestsTMA16
Target ValidationTMA16
Huge Navigator TMA16 [HugePedia]
ClinGenTMA16
Clinical trials, drugs, therapy
MyCancerGenomeTMA16
Protein Interactions : CTDTMA16
Pharm GKB GenePA162379923
PharosQ96EY4
Clinical trialTMA16
Miscellaneous
canSAR (ICR)TMA16
HarmonizomeTMA16
DataMed IndexTMA16
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMA16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:38 CEST 2021

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