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TMA7 (translation machinery associated 7 homolog)

Identity

Alias_namesCCDC72
coiled-coil domain containing 72
translation machinery associated 7 homolog (S. cerevisiae)
Alias_symbol (synonym)HSPC016
Other alias
HGNC (Hugo) TMA7
LocusID (NCBI) 51372
Atlas_Id 56253
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48440238 and ends at 48444208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP1A1 (1p13.1) / TMA7 (3p21.31)TMA7 (3p21.31) / CCND1 (11q13.3)TMA7 (3p21.31) / DHX30 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMA7   26932
Cards
Entrez_Gene (NCBI)TMA7  51372  translation machinery associated 7 homolog
AliasesCCDC72; HSPC016
GeneCards (Weizmann)TMA7
Ensembl hg19 (Hinxton)ENSG00000232112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232112 [Gene_View]  chr3:48440238-48444208 [Contig_View]  TMA7 [Vega]
ICGC DataPortalENSG00000232112
TCGA cBioPortalTMA7
AceView (NCBI)TMA7
Genatlas (Paris)TMA7
WikiGenes51372
SOURCE (Princeton)TMA7
Genetics Home Reference (NIH)TMA7
Genomic and cartography
GoldenPath hg38 (UCSC)TMA7  -     chr3:48440238-48444208 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMA7  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblTMA7 - 3p21.31 [CytoView hg19]  TMA7 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBITMA7 [Mapview hg19]  TMA7 [Mapview hg38]
OMIM615808   
Gene and transcription
Genbank (Entrez)AA149268 AF077202 AF161448 AI339191 AK126594
RefSeq transcript (Entrez)NM_001329417 NM_015933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMA7
Cluster EST : UnigeneHs.356440 [ NCBI ]
CGAP (NCI)Hs.356440
Alternative Splicing GalleryENSG00000232112
Gene ExpressionTMA7 [ NCBI-GEO ]   TMA7 [ EBI - ARRAY_EXPRESS ]   TMA7 [ SEEK ]   TMA7 [ MEM ]
Gene Expression Viewer (FireBrowse)TMA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51372
GTEX Portal (Tissue expression)TMA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2S6
Splice isoforms : SwissVarQ9Y2S6
PhosPhoSitePlusQ9Y2S6
Domains : Interpro (EBI)TMA7   
Domain families : Pfam (Sanger)TMA7 (PF09072)   
Domain families : Pfam (NCBI)pfam09072   
Conserved Domain (NCBI)TMA7
DMDM Disease mutations51372
Blocks (Seattle)TMA7
SuperfamilyQ9Y2S6
Human Protein AtlasENSG00000232112
Peptide AtlasQ9Y2S6
HPRD13686
IPIIPI00006378   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2S6
IntAct (EBI)Q9Y2S6
FunCoupENSG00000232112
BioGRIDTMA7
STRING (EMBL)TMA7
ZODIACTMA7
Ontologies - Pathways
QuickGOQ9Y2S6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTMA7
Atlas of Cancer Signalling NetworkTMA7
Wikipedia pathwaysTMA7
Orthology - Evolution
OrthoDB51372
GeneTree (enSembl)ENSG00000232112
Phylogenetic Trees/Animal Genes : TreeFamTMA7
HOVERGENQ9Y2S6
HOGENOMQ9Y2S6
Homologs : HomoloGeneTMA7
Homology/Alignments : Family Browser (UCSC)TMA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMA7
dbVarTMA7
ClinVarTMA7
1000_GenomesTMA7 
Exome Variant ServerTMA7
ExAC (Exome Aggregation Consortium)TMA7 (select the gene name)
Genetic variants : HAPMAP51372
Genomic Variants (DGV)TMA7 [DGVbeta]
DECIPHERTMA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMA7 
Mutations
ICGC Data PortalTMA7 
TCGA Data PortalTMA7 
Broad Tumor PortalTMA7
OASIS PortalTMA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMA7
DgiDB (Drug Gene Interaction Database)TMA7
DoCM (Curated mutations)TMA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMA7 (select a term)
intoGenTMA7
Cancer3DTMA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615808   
Orphanet
MedgenTMA7
Genetic Testing Registry TMA7
NextProtQ9Y2S6 [Medical]
TSGene51372
GENETestsTMA7
Target ValidationTMA7
Huge Navigator TMA7 [HugePedia]
snp3D : Map Gene to Disease51372
BioCentury BCIQTMA7
ClinGenTMA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51372
Chemical/Pharm GKB GenePA143485423
Clinical trialTMA7
Miscellaneous
canSAR (ICR)TMA7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMA7
EVEXTMA7
GoPubMedTMA7
iHOPTMA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:59:34 CEST 2017

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