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TMA7 (translation machinery associated 7 homolog)

Identity

Alias (NCBI)CCDC72
HSPC016
HGNC (Hugo) TMA7
HGNC Alias symbHSPC016
HGNC Previous nameCCDC72
HGNC Previous namecoiled-coil domain containing 72
 translation machinery associated 7 homolog (S. cerevisiae)
LocusID (NCBI) 51372
Atlas_Id 56253
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48440257 and ends at 48444208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP1A1 (1p13.1) / TMA7 (3p21.31)TMA7 (3p21.31) / CCND1 (11q13.3)TMA7 (3p21.31) / DHX30 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMA7   26932
Cards
Entrez_Gene (NCBI)TMA7    translation machinery associated 7 homolog
AliasesCCDC72; HSPC016
GeneCards (Weizmann)TMA7
Ensembl hg19 (Hinxton)ENSG00000232112 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232112 [Gene_View]  ENSG00000232112 [Sequence]  chr3:48440257-48444208 [Contig_View]  TMA7 [Vega]
ICGC DataPortalENSG00000232112
TCGA cBioPortalTMA7
AceView (NCBI)TMA7
Genatlas (Paris)TMA7
SOURCE (Princeton)TMA7
Genetics Home Reference (NIH)TMA7
Genomic and cartography
GoldenPath hg38 (UCSC)TMA7  -     chr3:48440257-48444208 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMA7  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathTMA7 - 3p21.31 [CytoView hg19]  TMA7 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000232112
Genome Data Viewer NCBITMA7 [Mapview hg19]  
OMIM615808   
Gene and transcription
Genbank (Entrez)AA149268 AF077202 AF161448 AI339191 AK126594
RefSeq transcript (Entrez)NM_001329417 NM_015933
Consensus coding sequences : CCDS (NCBI)TMA7
Gene ExpressionTMA7 [ NCBI-GEO ]   TMA7 [ EBI - ARRAY_EXPRESS ]   TMA7 [ SEEK ]   TMA7 [ MEM ]
Gene Expression Viewer (FireBrowse)TMA7 [ Firebrowse - Broad ]
GenevisibleExpression of TMA7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51372
GTEX Portal (Tissue expression)TMA7
Human Protein AtlasENSG00000232112-TMA7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2S6
PhosPhoSitePlusQ9Y2S6
Domains : Interpro (EBI)TMA7   
Domain families : Pfam (Sanger)TMA7 (PF09072)   
Domain families : Pfam (NCBI)pfam09072   
Conserved Domain (NCBI)TMA7
SuperfamilyQ9Y2S6
AlphaFold pdb e-kbQ9Y2S6   
Human Protein Atlas [tissue]ENSG00000232112-TMA7 [tissue]
HPRD13686
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2S6
IntAct (EBI)Q9Y2S6
BioGRIDTMA7
STRING (EMBL)TMA7
ZODIACTMA7
Ontologies - Pathways
QuickGOQ9Y2S6
Ontology : AmiGOcytoplasmic translation  
Ontology : EGO-EBIcytoplasmic translation  
NDEx NetworkTMA7
Atlas of Cancer Signalling NetworkTMA7
Wikipedia pathwaysTMA7
Orthology - Evolution
OrthoDB51372
GeneTree (enSembl)ENSG00000232112
Phylogenetic Trees/Animal Genes : TreeFamTMA7
Homologs : HomoloGeneTMA7
Homology/Alignments : Family Browser (UCSC)TMA7
Gene fusions - Rearrangements
Fusion : QuiverTMA7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMA7
dbVarTMA7
ClinVarTMA7
MonarchTMA7
1000_GenomesTMA7 
Exome Variant ServerTMA7
GNOMAD BrowserENSG00000232112
Varsome BrowserTMA7
ACMGTMA7 variants
VarityQ9Y2S6
Genomic Variants (DGV)TMA7 [DGVbeta]
DECIPHERTMA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMA7 
Mutations
ICGC Data PortalTMA7 
TCGA Data PortalTMA7 
Broad Tumor PortalTMA7
OASIS PortalTMA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMA7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMA7
Mutations and Diseases : HGMDTMA7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMA7
DgiDB (Drug Gene Interaction Database)TMA7
DoCM (Curated mutations)TMA7
CIViC (Clinical Interpretations of Variants in Cancer)TMA7
Cancer3DTMA7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615808   
Orphanet
DisGeNETTMA7
MedgenTMA7
Genetic Testing Registry TMA7
NextProtQ9Y2S6 [Medical]
GENETestsTMA7
Target ValidationTMA7
Huge Navigator TMA7 [HugePedia]
ClinGenTMA7
Clinical trials, drugs, therapy
MyCancerGenomeTMA7
Protein Interactions : CTDTMA7
Pharm GKB GenePA143485423
PharosQ9Y2S6
Clinical trialTMA7
Miscellaneous
canSAR (ICR)TMA7
HarmonizomeTMA7
DataMed IndexTMA7
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:18 CEST 2021

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