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TMC2 (transmembrane channel like 2)

Identity

Alias (NCBI)C20orf145
HGNC (Hugo) TMC2
HGNC Alias symbdJ686C3.3
HGNC Previous nameC20orf145
HGNC Previous nametransmembrane, cochlear expressed, 2
LocusID (NCBI) 117532
Atlas_Id 54703
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2536607 and ends at 2641784 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EBF4 (20p13) / TMC2 (20p13)NBEAL2 (3p21.31) / TMC2 (20p13)EBF4 20p13 / TMC2 20p13
NBEAL2 3p21.31 / TMC2 20p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  dup(20)(p13p13) TMC2/PTPRA


External links

Nomenclature
HGNC (Hugo)TMC2   16527
Cards
Entrez_Gene (NCBI)TMC2    transmembrane channel like 2
AliasesC20orf145
GeneCards (Weizmann)TMC2
Ensembl hg19 (Hinxton)ENSG00000149488 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149488 [Gene_View]  ENSG00000149488 [Sequence]  chr20:2536607-2641784 [Contig_View]  TMC2 [Vega]
ICGC DataPortalENSG00000149488
TCGA cBioPortalTMC2
AceView (NCBI)TMC2
Genatlas (Paris)TMC2
SOURCE (Princeton)TMC2
Genetics Home Reference (NIH)TMC2
Genomic and cartography
GoldenPath hg38 (UCSC)TMC2  -     chr20:2536607-2641784 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMC2  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathTMC2 - 20p13 [CytoView hg19]  TMC2 - 20p13 [CytoView hg38]
ImmunoBaseENSG00000149488
Genome Data Viewer NCBITMC2 [Mapview hg19]  
OMIM606707   
Gene and transcription
Genbank (Entrez)AF417580 AK094789 AK127751 AK294013 AK309782
RefSeq transcript (Entrez)NM_080751
Consensus coding sequences : CCDS (NCBI)TMC2
Gene ExpressionTMC2 [ NCBI-GEO ]   TMC2 [ EBI - ARRAY_EXPRESS ]   TMC2 [ SEEK ]   TMC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TMC2 [ Firebrowse - Broad ]
GenevisibleExpression of TMC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117532
GTEX Portal (Tissue expression)TMC2
Human Protein AtlasENSG00000149488-TMC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMC2
Human Protein Atlas [tissue]ENSG00000149488-TMC2 [tissue]
HPRD09463
Protein Interaction databases
BioGRIDTMC2
STRING (EMBL)TMC2
ZODIACTMC2
Ontologies - Pathways
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:35:19 CEST 2021

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