Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMC3 (transmembrane channel like 3)

Identity

Other alias-
HGNC (Hugo) TMC3
LocusID (NCBI) 342125
Atlas_Id 74744
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 81332419 and ends at 81374077 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMC3   22995
Cards
Entrez_Gene (NCBI)TMC3  342125  transmembrane channel like 3
Aliases
GeneCards (Weizmann)TMC3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:81332419-81374077 [Contig_View]  TMC3 [Vega]
TCGA cBioPortalTMC3
AceView (NCBI)TMC3
Genatlas (Paris)TMC3
WikiGenes342125
SOURCE (Princeton)TMC3
Genetics Home Reference (NIH)TMC3
Genomic and cartography
GoldenPath hg38 (UCSC)TMC3  -     chr15:81332419-81374077 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMC3  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblTMC3 - 15q25.1 [CytoView hg19]  TMC3 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBITMC3 [Mapview hg19]  TMC3 [Mapview hg38]
OMIM617196   
Gene and transcription
Genbank (Entrez)AY236490 AY263163 BC132679 BC143410 BC157874
RefSeq transcript (Entrez)NM_001080532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMC3
Cluster EST : UnigeneHs.253489 [ NCBI ]
CGAP (NCI)Hs.253489
Gene ExpressionTMC3 [ NCBI-GEO ]   TMC3 [ EBI - ARRAY_EXPRESS ]   TMC3 [ SEEK ]   TMC3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342125
GTEX Portal (Tissue expression)TMC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5M5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5M5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5M5
Splice isoforms : SwissVarQ7Z5M5
PhosPhoSitePlusQ7Z5M5
Domains : Interpro (EBI)TMC   
Domain families : Pfam (Sanger)TMC (PF07810)   
Domain families : Pfam (NCBI)pfam07810   
Conserved Domain (NCBI)TMC3
DMDM Disease mutations342125
Blocks (Seattle)TMC3
SuperfamilyQ7Z5M5
Peptide AtlasQ7Z5M5
IPIIPI00374748   IPI00479701   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5M5
IntAct (EBI)Q7Z5M5
BioGRIDTMC3
STRING (EMBL)TMC3
ZODIACTMC3
Ontologies - Pathways
QuickGOQ7Z5M5
Ontology : AmiGOion transport  integral component of membrane  
Ontology : EGO-EBIion transport  integral component of membrane  
NDEx NetworkTMC3
Atlas of Cancer Signalling NetworkTMC3
Wikipedia pathwaysTMC3
Orthology - Evolution
OrthoDB342125
Phylogenetic Trees/Animal Genes : TreeFamTMC3
HOVERGENQ7Z5M5
HOGENOMQ7Z5M5
Homologs : HomoloGeneTMC3
Homology/Alignments : Family Browser (UCSC)TMC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMC3
dbVarTMC3
ClinVarTMC3
1000_GenomesTMC3 
Exome Variant ServerTMC3
ExAC (Exome Aggregation Consortium)TMC3 (select the gene name)
Genetic variants : HAPMAP342125
Genomic Variants (DGV)TMC3 [DGVbeta]
DECIPHERTMC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMC3 
Mutations
ICGC Data PortalTMC3 
TCGA Data PortalTMC3 
Broad Tumor PortalTMC3
OASIS PortalTMC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMC3
DgiDB (Drug Gene Interaction Database)TMC3
DoCM (Curated mutations)TMC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMC3 (select a term)
intoGenTMC3
Cancer3DTMC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617196   
Orphanet
MedgenTMC3
Genetic Testing Registry TMC3
NextProtQ7Z5M5 [Medical]
TSGene342125
GENETestsTMC3
Target ValidationTMC3
Huge Navigator TMC3 [HugePedia]
snp3D : Map Gene to Disease342125
BioCentury BCIQTMC3
ClinGenTMC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342125
Chemical/Pharm GKB GenePA134916179
Clinical trialTMC3
Miscellaneous
canSAR (ICR)TMC3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMC3
EVEXTMC3
GoPubMedTMC3
iHOPTMC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:33 CEST 2017

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