Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMC7 (transmembrane channel like 7)

Identity

Alias (NCBI)-
HGNC (Hugo) TMC7
HGNC Alias symbFLJ21240
LocusID (NCBI) 79905
Atlas_Id 74747
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 18983934 and ends at 19063940 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DYM (18q21.1) / TMC7 (16p12.3)TMC7 (16p12.3) / PARK7 (1p36.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMC7   23000
Cards
Entrez_Gene (NCBI)TMC7    transmembrane channel like 7
Aliases
GeneCards (Weizmann)TMC7
Ensembl hg19 (Hinxton)ENSG00000170537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170537 [Gene_View]  ENSG00000170537 [Sequence]  chr16:18983934-19063940 [Contig_View]  TMC7 [Vega]
ICGC DataPortalENSG00000170537
TCGA cBioPortalTMC7
AceView (NCBI)TMC7
Genatlas (Paris)TMC7
SOURCE (Princeton)TMC7
Genetics Home Reference (NIH)TMC7
Genomic and cartography
GoldenPath hg38 (UCSC)TMC7  -     chr16:18983934-19063940 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMC7  -     16p12.3   [Description]    (hg19-Feb_2009)
GoldenPathTMC7 - 16p12.3 [CytoView hg19]  TMC7 - 16p12.3 [CytoView hg38]
ImmunoBaseENSG00000170537
Genome Data Viewer NCBITMC7 [Mapview hg19]  
OMIM617198   
Gene and transcription
Genbank (Entrez)AF088010 AK024893 AK094664 AK293874 AY236498
RefSeq transcript (Entrez)NM_001160364 NM_001300732 NM_001324263 NM_001324265 NM_001324268 NM_024847
Consensus coding sequences : CCDS (NCBI)TMC7
Gene ExpressionTMC7 [ NCBI-GEO ]   TMC7 [ EBI - ARRAY_EXPRESS ]   TMC7 [ SEEK ]   TMC7 [ MEM ]
Gene Expression Viewer (FireBrowse)TMC7 [ Firebrowse - Broad ]
GenevisibleExpression of TMC7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79905
GTEX Portal (Tissue expression)TMC7
Human Protein AtlasENSG00000170537-TMC7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z402   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z402  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z402
PhosPhoSitePlusQ7Z402
Domains : Interpro (EBI)TMC    TMC_dom   
Domain families : Pfam (Sanger)TMC (PF07810)   
Domain families : Pfam (NCBI)pfam07810   
Conserved Domain (NCBI)TMC7
SuperfamilyQ7Z402
AlphaFold pdb e-kbQ7Z402   
Human Protein Atlas [tissue]ENSG00000170537-TMC7 [tissue]
HPRD15517
Protein Interaction databases
DIP (DOE-UCLA)Q7Z402
IntAct (EBI)Q7Z402
BioGRIDTMC7
STRING (EMBL)TMC7
ZODIACTMC7
Ontologies - Pathways
QuickGOQ7Z402
Ontology : AmiGOintegral component of plasma membrane  mechanosensitive ion channel activity  ion transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  mechanosensitive ion channel activity  ion transmembrane transport  
NDEx NetworkTMC7
Atlas of Cancer Signalling NetworkTMC7
Wikipedia pathwaysTMC7
Orthology - Evolution
OrthoDB79905
GeneTree (enSembl)ENSG00000170537
Phylogenetic Trees/Animal Genes : TreeFamTMC7
Homologs : HomoloGeneTMC7
Homology/Alignments : Family Browser (UCSC)TMC7
Gene fusions - Rearrangements
Fusion : QuiverTMC7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMC7
dbVarTMC7
ClinVarTMC7
MonarchTMC7
1000_GenomesTMC7 
Exome Variant ServerTMC7
GNOMAD BrowserENSG00000170537
Varsome BrowserTMC7
ACMGTMC7 variants
VarityQ7Z402
Genomic Variants (DGV)TMC7 [DGVbeta]
DECIPHERTMC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMC7 
Mutations
ICGC Data PortalTMC7 
TCGA Data PortalTMC7 
Broad Tumor PortalTMC7
OASIS PortalTMC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMC7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMC7
Mutations and Diseases : HGMDTMC7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMC7
DgiDB (Drug Gene Interaction Database)TMC7
DoCM (Curated mutations)TMC7
CIViC (Clinical Interpretations of Variants in Cancer)TMC7
Cancer3DTMC7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617198   
Orphanet
DisGeNETTMC7
MedgenTMC7
Genetic Testing Registry TMC7
NextProtQ7Z402 [Medical]
GENETestsTMC7
Target ValidationTMC7
Huge Navigator TMC7 [HugePedia]
ClinGenTMC7
Clinical trials, drugs, therapy
MyCancerGenomeTMC7
Protein Interactions : CTDTMC7
Pharm GKB GenePA134988099
PharosQ7Z402
Clinical trialTMC7
Miscellaneous
canSAR (ICR)TMC7
HarmonizomeTMC7
DataMed IndexTMC7
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:40 CEST 2021

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