Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMC7 (transmembrane channel like 7)

Identity

Alias_symbol (synonym)FLJ21240
Other alias-
HGNC (Hugo) TMC7
LocusID (NCBI) 79905
Atlas_Id 74747
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 18984287 and ends at 19063940 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DYM (18q21.1) / TMC7 (16p12.3)TMC7 (16p12.3) / PARK7 (1p36.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMC7   23000
Cards
Entrez_Gene (NCBI)TMC7  79905  transmembrane channel like 7
Aliases
GeneCards (Weizmann)TMC7
Ensembl hg19 (Hinxton)ENSG00000170537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170537 [Gene_View]  chr16:18984287-19063940 [Contig_View]  TMC7 [Vega]
ICGC DataPortalENSG00000170537
TCGA cBioPortalTMC7
AceView (NCBI)TMC7
Genatlas (Paris)TMC7
WikiGenes79905
SOURCE (Princeton)TMC7
Genetics Home Reference (NIH)TMC7
Genomic and cartography
GoldenPath hg38 (UCSC)TMC7  -     chr16:18984287-19063940 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMC7  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblTMC7 - 16p12.3 [CytoView hg19]  TMC7 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBITMC7 [Mapview hg19]  TMC7 [Mapview hg38]
OMIM617198   
Gene and transcription
Genbank (Entrez)AF088010 AK024893 AK094664 AK293874 AY236498
RefSeq transcript (Entrez)NM_001160364 NM_001300732 NM_001324263 NM_001324265 NM_001324268 NM_024847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMC7
Cluster EST : UnigeneHs.531661 [ NCBI ]
CGAP (NCI)Hs.531661
Alternative Splicing GalleryENSG00000170537
Gene ExpressionTMC7 [ NCBI-GEO ]   TMC7 [ EBI - ARRAY_EXPRESS ]   TMC7 [ SEEK ]   TMC7 [ MEM ]
Gene Expression Viewer (FireBrowse)TMC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79905
GTEX Portal (Tissue expression)TMC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z402   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z402  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z402
Splice isoforms : SwissVarQ7Z402
PhosPhoSitePlusQ7Z402
Domains : Interpro (EBI)TMC   
Domain families : Pfam (Sanger)TMC (PF07810)   
Domain families : Pfam (NCBI)pfam07810   
Conserved Domain (NCBI)TMC7
DMDM Disease mutations79905
Blocks (Seattle)TMC7
SuperfamilyQ7Z402
Human Protein AtlasENSG00000170537
Peptide AtlasQ7Z402
HPRD15517
IPIIPI00375845   IPI00910715   IPI00930486   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z402
IntAct (EBI)Q7Z402
FunCoupENSG00000170537
BioGRIDTMC7
STRING (EMBL)TMC7
ZODIACTMC7
Ontologies - Pathways
QuickGOQ7Z402
Ontology : AmiGOion transport  integral component of membrane  
Ontology : EGO-EBIion transport  integral component of membrane  
NDEx NetworkTMC7
Atlas of Cancer Signalling NetworkTMC7
Wikipedia pathwaysTMC7
Orthology - Evolution
OrthoDB79905
GeneTree (enSembl)ENSG00000170537
Phylogenetic Trees/Animal Genes : TreeFamTMC7
HOVERGENQ7Z402
HOGENOMQ7Z402
Homologs : HomoloGeneTMC7
Homology/Alignments : Family Browser (UCSC)TMC7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMC7
dbVarTMC7
ClinVarTMC7
1000_GenomesTMC7 
Exome Variant ServerTMC7
ExAC (Exome Aggregation Consortium)TMC7 (select the gene name)
Genetic variants : HAPMAP79905
Genomic Variants (DGV)TMC7 [DGVbeta]
DECIPHERTMC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMC7 
Mutations
ICGC Data PortalTMC7 
TCGA Data PortalTMC7 
Broad Tumor PortalTMC7
OASIS PortalTMC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMC7
DgiDB (Drug Gene Interaction Database)TMC7
DoCM (Curated mutations)TMC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMC7 (select a term)
intoGenTMC7
Cancer3DTMC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617198   
Orphanet
MedgenTMC7
Genetic Testing Registry TMC7
NextProtQ7Z402 [Medical]
TSGene79905
GENETestsTMC7
Target ValidationTMC7
Huge Navigator TMC7 [HugePedia]
snp3D : Map Gene to Disease79905
BioCentury BCIQTMC7
ClinGenTMC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79905
Chemical/Pharm GKB GenePA134988099
Clinical trialTMC7
Miscellaneous
canSAR (ICR)TMC7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMC7
EVEXTMC7
GoPubMedTMC7
iHOPTMC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:33 CEST 2017

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