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TMCC3 (transmembrane and coiled-coil domain family 3)

Identity

Alias (NCBI)-
HGNC (Hugo) TMCC3
HGNC Alias symbKIAA1145
HGNC Previous nametransmembrane and coiled-coil domains 3
LocusID (NCBI) 57458
Atlas_Id 74750
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 94567122 and ends at 94650557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EEA1 (12q22) / TMCC3 (12q22)MRPL40 (22q11.21) / TMCC3 (12q22)EEA1 TMCC3
MRPL40 TMCC3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMCC3   29199
Cards
Entrez_Gene (NCBI)TMCC3    transmembrane and coiled-coil domain family 3
Aliases
GeneCards (Weizmann)TMCC3
Ensembl hg19 (Hinxton)ENSG00000057704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000057704 [Gene_View]  ENSG00000057704 [Sequence]  chr12:94567122-94650557 [Contig_View]  TMCC3 [Vega]
ICGC DataPortalENSG00000057704
TCGA cBioPortalTMCC3
AceView (NCBI)TMCC3
Genatlas (Paris)TMCC3
SOURCE (Princeton)TMCC3
Genetics Home Reference (NIH)TMCC3
Genomic and cartography
GoldenPath hg38 (UCSC)TMCC3  -     chr12:94567122-94650557 -  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCC3  -     12q22   [Description]    (hg19-Feb_2009)
GoldenPathTMCC3 - 12q22 [CytoView hg19]  TMCC3 - 12q22 [CytoView hg38]
ImmunoBaseENSG00000057704
Genome Data Viewer NCBITMCC3 [Mapview hg19]  
OMIM617459   
Gene and transcription
Genbank (Entrez)AB032971 AB073655 AI361720 BC040535 BE158711
RefSeq transcript (Entrez)NM_001301036 NM_020698
Consensus coding sequences : CCDS (NCBI)TMCC3
Gene ExpressionTMCC3 [ NCBI-GEO ]   TMCC3 [ EBI - ARRAY_EXPRESS ]   TMCC3 [ SEEK ]   TMCC3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCC3 [ Firebrowse - Broad ]
GenevisibleExpression of TMCC3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57458
GTEX Portal (Tissue expression)TMCC3
Human Protein AtlasENSG00000057704-TMCC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULS5
PhosPhoSitePlusQ9ULS5
Domains : Interpro (EBI)TEX28/TMCC   
Domain families : Pfam (Sanger)Tmemb_cc2 (PF10267)   
Domain families : Pfam (NCBI)pfam10267   
Conserved Domain (NCBI)TMCC3
SuperfamilyQ9ULS5
AlphaFold pdb e-kbQ9ULS5   
Human Protein Atlas [tissue]ENSG00000057704-TMCC3 [tissue]
HPRD15519
Protein Interaction databases
DIP (DOE-UCLA)Q9ULS5
IntAct (EBI)Q9ULS5
BioGRIDTMCC3
STRING (EMBL)TMCC3
ZODIACTMCC3
Ontologies - Pathways
QuickGOQ9ULS5
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  endomembrane system  integral component of membrane  identical protein binding  14-3-3 protein binding  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  endomembrane system  integral component of membrane  identical protein binding  14-3-3 protein binding  
NDEx NetworkTMCC3
Atlas of Cancer Signalling NetworkTMCC3
Wikipedia pathwaysTMCC3
Orthology - Evolution
OrthoDB57458
GeneTree (enSembl)ENSG00000057704
Phylogenetic Trees/Animal Genes : TreeFamTMCC3
Homologs : HomoloGeneTMCC3
Homology/Alignments : Family Browser (UCSC)TMCC3
Gene fusions - Rearrangements
Fusion : QuiverTMCC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCC3
dbVarTMCC3
ClinVarTMCC3
MonarchTMCC3
1000_GenomesTMCC3 
Exome Variant ServerTMCC3
GNOMAD BrowserENSG00000057704
Varsome BrowserTMCC3
ACMGTMCC3 variants
VarityQ9ULS5
Genomic Variants (DGV)TMCC3 [DGVbeta]
DECIPHERTMCC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCC3 
Mutations
ICGC Data PortalTMCC3 
TCGA Data PortalTMCC3 
Broad Tumor PortalTMCC3
OASIS PortalTMCC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMCC3
Mutations and Diseases : HGMDTMCC3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMCC3
DgiDB (Drug Gene Interaction Database)TMCC3
DoCM (Curated mutations)TMCC3
CIViC (Clinical Interpretations of Variants in Cancer)TMCC3
Cancer3DTMCC3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617459   
Orphanet
DisGeNETTMCC3
MedgenTMCC3
Genetic Testing Registry TMCC3
NextProtQ9ULS5 [Medical]
GENETestsTMCC3
Target ValidationTMCC3
Huge Navigator TMCC3 [HugePedia]
ClinGenTMCC3
Clinical trials, drugs, therapy
MyCancerGenomeTMCC3
Protein Interactions : CTDTMCC3
Pharm GKB GenePA134874359
PharosQ9ULS5
Clinical trialTMCC3
Miscellaneous
canSAR (ICR)TMCC3
HarmonizomeTMCC3
DataMed IndexTMCC3
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMCC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:40 CEST 2021

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