Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMCC3 (transmembrane and coiled-coil domain family 3)

Identity

Alias_namestransmembrane and coiled-coil domains 3
Alias_symbol (synonym)KIAA1145
Other alias-
HGNC (Hugo) TMCC3
LocusID (NCBI) 57458
Atlas_Id 74750
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 94567124 and ends at 94616151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EEA1 (12q22) / TMCC3 (12q22)MRPL40 (22q11.21) / TMCC3 (12q22)EEA1 TMCC3
MRPL40 TMCC3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCC3   29199
Cards
Entrez_Gene (NCBI)TMCC3  57458  transmembrane and coiled-coil domain family 3
Aliases
GeneCards (Weizmann)TMCC3
Ensembl hg19 (Hinxton)ENSG00000057704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000057704 [Gene_View]  chr12:94567124-94616151 [Contig_View]  TMCC3 [Vega]
ICGC DataPortalENSG00000057704
TCGA cBioPortalTMCC3
AceView (NCBI)TMCC3
Genatlas (Paris)TMCC3
WikiGenes57458
SOURCE (Princeton)TMCC3
Genetics Home Reference (NIH)TMCC3
Genomic and cartography
GoldenPath hg38 (UCSC)TMCC3  -     chr12:94567124-94616151 -  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCC3  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblTMCC3 - 12q22 [CytoView hg19]  TMCC3 - 12q22 [CytoView hg38]
Mapping of homologs : NCBITMCC3 [Mapview hg19]  TMCC3 [Mapview hg38]
OMIM617459   
Gene and transcription
Genbank (Entrez)AB032971 AB073655 AI361720 BC040535 BE158711
RefSeq transcript (Entrez)NM_001301036 NM_020698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCC3
Cluster EST : UnigeneHs.634139 [ NCBI ]
CGAP (NCI)Hs.634139
Alternative Splicing GalleryENSG00000057704
Gene ExpressionTMCC3 [ NCBI-GEO ]   TMCC3 [ EBI - ARRAY_EXPRESS ]   TMCC3 [ SEEK ]   TMCC3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57458
GTEX Portal (Tissue expression)TMCC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULS5
Splice isoforms : SwissVarQ9ULS5
PhosPhoSitePlusQ9ULS5
Domains : Interpro (EBI)TEX28/TMCC   
Domain families : Pfam (Sanger)Tmemb_cc2 (PF10267)   
Domain families : Pfam (NCBI)pfam10267   
Conserved Domain (NCBI)TMCC3
DMDM Disease mutations57458
Blocks (Seattle)TMCC3
SuperfamilyQ9ULS5
Human Protein AtlasENSG00000057704
Peptide AtlasQ9ULS5
HPRD15519
IPIIPI00240059   IPI01022681   IPI01022780   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULS5
IntAct (EBI)Q9ULS5
FunCoupENSG00000057704
BioGRIDTMCC3
STRING (EMBL)TMCC3
ZODIACTMCC3
Ontologies - Pathways
QuickGOQ9ULS5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMCC3
Atlas of Cancer Signalling NetworkTMCC3
Wikipedia pathwaysTMCC3
Orthology - Evolution
OrthoDB57458
GeneTree (enSembl)ENSG00000057704
Phylogenetic Trees/Animal Genes : TreeFamTMCC3
HOVERGENQ9ULS5
HOGENOMQ9ULS5
Homologs : HomoloGeneTMCC3
Homology/Alignments : Family Browser (UCSC)TMCC3
Gene fusions - Rearrangements
Fusion: TCGAEEA1 TMCC3
Fusion: TCGAMRPL40 TMCC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCC3
dbVarTMCC3
ClinVarTMCC3
1000_GenomesTMCC3 
Exome Variant ServerTMCC3
ExAC (Exome Aggregation Consortium)TMCC3 (select the gene name)
Genetic variants : HAPMAP57458
Genomic Variants (DGV)TMCC3 [DGVbeta]
DECIPHERTMCC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCC3 
Mutations
ICGC Data PortalTMCC3 
TCGA Data PortalTMCC3 
Broad Tumor PortalTMCC3
OASIS PortalTMCC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCC3
DgiDB (Drug Gene Interaction Database)TMCC3
DoCM (Curated mutations)TMCC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCC3 (select a term)
intoGenTMCC3
Cancer3DTMCC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617459   
Orphanet
MedgenTMCC3
Genetic Testing Registry TMCC3
NextProtQ9ULS5 [Medical]
TSGene57458
GENETestsTMCC3
Target ValidationTMCC3
Huge Navigator TMCC3 [HugePedia]
snp3D : Map Gene to Disease57458
BioCentury BCIQTMCC3
ClinGenTMCC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57458
Chemical/Pharm GKB GenePA134874359
Clinical trialTMCC3
Miscellaneous
canSAR (ICR)TMCC3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCC3
EVEXTMCC3
GoPubMedTMCC3
iHOPTMCC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.