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TMCO1 (transmembrane and coiled-coil domains 1)

Identity

Alias_namesTMCC4
transmembrane and coiled-coil domains 4
Alias_symbol (synonym)HP10122
Other aliasPCIA3
PNAS-136
HGNC (Hugo) TMCO1
LocusID (NCBI) 54499
Atlas_Id 74751
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 165724291 and ends at 165768922 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMCO1 (1q24.1) / TMCO1 (1q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO1   18188
Cards
Entrez_Gene (NCBI)TMCO1  54499  transmembrane and coiled-coil domains 1
AliasesHP10122; PCIA3; PNAS-136; TMCC4
GeneCards (Weizmann)TMCO1
Ensembl hg19 (Hinxton)ENSG00000143183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143183 [Gene_View]  chr1:165724291-165768922 [Contig_View]  TMCO1 [Vega]
ICGC DataPortalENSG00000143183
TCGA cBioPortalTMCO1
AceView (NCBI)TMCO1
Genatlas (Paris)TMCO1
WikiGenes54499
SOURCE (Princeton)TMCO1
Genetics Home Reference (NIH)TMCO1
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO1  -     chr1:165724291-165768922 -  1q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO1  -     1q24.1   [Description]    (hg19-Feb_2009)
EnsemblTMCO1 - 1q24.1 [CytoView hg19]  TMCO1 - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBITMCO1 [Mapview hg19]  TMCO1 [Mapview hg38]
OMIM614123   
Gene and transcription
Genbank (Entrez)AB020980 AF070626 AF274935 AF277194 AI379550
RefSeq transcript (Entrez)NM_001256164 NM_001256165 NM_019026
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO1
Cluster EST : UnigeneHs.31498 [ NCBI ]
CGAP (NCI)Hs.31498
Alternative Splicing GalleryENSG00000143183
Gene ExpressionTMCO1 [ NCBI-GEO ]   TMCO1 [ EBI - ARRAY_EXPRESS ]   TMCO1 [ SEEK ]   TMCO1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54499
GTEX Portal (Tissue expression)TMCO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UM00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UM00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UM00
Splice isoforms : SwissVarQ9UM00
PhosPhoSitePlusQ9UM00
Domains : Interpro (EBI)EMC3/TMCO1    TMCO1   
Domain families : Pfam (Sanger)DUF106 (PF01956)   
Domain families : Pfam (NCBI)pfam01956   
Domain families : Smart (EMBL)DUF106 (SM01415)  
Conserved Domain (NCBI)TMCO1
DMDM Disease mutations54499
Blocks (Seattle)TMCO1
SuperfamilyQ9UM00
Human Protein AtlasENSG00000143183
Peptide AtlasQ9UM00
HPRD14243
IPIIPI00026111   IPI00761107   IPI01018843   
Protein Interaction databases
DIP (DOE-UCLA)Q9UM00
IntAct (EBI)Q9UM00
FunCoupENSG00000143183
BioGRIDTMCO1
STRING (EMBL)TMCO1
ZODIACTMCO1
Ontologies - Pathways
QuickGOQ9UM00
Ontology : AmiGOGolgi membrane  calcium channel activity  endoplasmic reticulum  ER overload response  integral component of endoplasmic reticulum membrane  endoplasmic reticulum calcium ion homeostasis  calcium ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  calcium channel activity  endoplasmic reticulum  ER overload response  integral component of endoplasmic reticulum membrane  endoplasmic reticulum calcium ion homeostasis  calcium ion transmembrane transport  
NDEx NetworkTMCO1
Atlas of Cancer Signalling NetworkTMCO1
Wikipedia pathwaysTMCO1
Orthology - Evolution
OrthoDB54499
GeneTree (enSembl)ENSG00000143183
Phylogenetic Trees/Animal Genes : TreeFamTMCO1
HOVERGENQ9UM00
HOGENOMQ9UM00
Homologs : HomoloGeneTMCO1
Homology/Alignments : Family Browser (UCSC)TMCO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO1
dbVarTMCO1
ClinVarTMCO1
1000_GenomesTMCO1 
Exome Variant ServerTMCO1
ExAC (Exome Aggregation Consortium)TMCO1 (select the gene name)
Genetic variants : HAPMAP54499
Genomic Variants (DGV)TMCO1 [DGVbeta]
DECIPHERTMCO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO1 
Mutations
ICGC Data PortalTMCO1 
TCGA Data PortalTMCO1 
Broad Tumor PortalTMCO1
OASIS PortalTMCO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO1
DgiDB (Drug Gene Interaction Database)TMCO1
DoCM (Curated mutations)TMCO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO1 (select a term)
intoGenTMCO1
Cancer3DTMCO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614123   
Orphanet1600   
MedgenTMCO1
Genetic Testing Registry TMCO1
NextProtQ9UM00 [Medical]
TSGene54499
GENETestsTMCO1
Target ValidationTMCO1
Huge Navigator TMCO1 [HugePedia]
snp3D : Map Gene to Disease54499
BioCentury BCIQTMCO1
ClinGenTMCO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54499
Chemical/Pharm GKB GenePA142670792
Clinical trialTMCO1
Miscellaneous
canSAR (ICR)TMCO1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO1
EVEXTMCO1
GoPubMedTMCO1
iHOPTMCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:34 CEST 2017

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