Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMCO2 (transmembrane and coiled-coil domains 2)

Identity

Alias_symbol (synonym)dJ39G22.2
Other alias
HGNC (Hugo) TMCO2
LocusID (NCBI) 127391
Atlas_Id 74752
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 40247901 and ends at 40251693 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO2   23312
Cards
Entrez_Gene (NCBI)TMCO2  127391  transmembrane and coiled-coil domains 2
AliasesdJ39G22.2
GeneCards (Weizmann)TMCO2
Ensembl hg19 (Hinxton)ENSG00000188800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188800 [Gene_View]  chr1:40247901-40251693 [Contig_View]  TMCO2 [Vega]
ICGC DataPortalENSG00000188800
TCGA cBioPortalTMCO2
AceView (NCBI)TMCO2
Genatlas (Paris)TMCO2
WikiGenes127391
SOURCE (Princeton)TMCO2
Genetics Home Reference (NIH)TMCO2
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO2  -     chr1:40247901-40251693 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO2  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblTMCO2 - 1p34.2 [CytoView hg19]  TMCO2 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBITMCO2 [Mapview hg19]  TMCO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC108666 BU567634 BU569147 DB518323 HM005658
RefSeq transcript (Entrez)NM_001008740
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO2
Cluster EST : UnigeneHs.406265 [ NCBI ]
CGAP (NCI)Hs.406265
Alternative Splicing GalleryENSG00000188800
Gene ExpressionTMCO2 [ NCBI-GEO ]   TMCO2 [ EBI - ARRAY_EXPRESS ]   TMCO2 [ SEEK ]   TMCO2 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127391
GTEX Portal (Tissue expression)TMCO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6W1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6W1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6W1
Splice isoforms : SwissVarQ7Z6W1
PhosPhoSitePlusQ7Z6W1
Domains : Interpro (EBI)TMCCDC2   
Domain families : Pfam (Sanger)TMCCDC2 (PF15844)   
Domain families : Pfam (NCBI)pfam15844   
Conserved Domain (NCBI)TMCO2
DMDM Disease mutations127391
Blocks (Seattle)TMCO2
SuperfamilyQ7Z6W1
Human Protein AtlasENSG00000188800
Peptide AtlasQ7Z6W1
HPRD18369
IPIIPI00028872   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6W1
IntAct (EBI)Q7Z6W1
FunCoupENSG00000188800
BioGRIDTMCO2
STRING (EMBL)TMCO2
ZODIACTMCO2
Ontologies - Pathways
QuickGOQ7Z6W1
Ontology : AmiGOnucleus  integral component of membrane  
Ontology : EGO-EBInucleus  integral component of membrane  
NDEx NetworkTMCO2
Atlas of Cancer Signalling NetworkTMCO2
Wikipedia pathwaysTMCO2
Orthology - Evolution
OrthoDB127391
GeneTree (enSembl)ENSG00000188800
Phylogenetic Trees/Animal Genes : TreeFamTMCO2
HOVERGENQ7Z6W1
HOGENOMQ7Z6W1
Homologs : HomoloGeneTMCO2
Homology/Alignments : Family Browser (UCSC)TMCO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO2
dbVarTMCO2
ClinVarTMCO2
1000_GenomesTMCO2 
Exome Variant ServerTMCO2
ExAC (Exome Aggregation Consortium)TMCO2 (select the gene name)
Genetic variants : HAPMAP127391
Genomic Variants (DGV)TMCO2 [DGVbeta]
DECIPHERTMCO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO2 
Mutations
ICGC Data PortalTMCO2 
TCGA Data PortalTMCO2 
Broad Tumor PortalTMCO2
OASIS PortalTMCO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO2
DgiDB (Drug Gene Interaction Database)TMCO2
DoCM (Curated mutations)TMCO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO2 (select a term)
intoGenTMCO2
Cancer3DTMCO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMCO2
Genetic Testing Registry TMCO2
NextProtQ7Z6W1 [Medical]
TSGene127391
GENETestsTMCO2
Target ValidationTMCO2
Huge Navigator TMCO2 [HugePedia]
snp3D : Map Gene to Disease127391
BioCentury BCIQTMCO2
ClinGenTMCO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127391
Chemical/Pharm GKB GenePA142670793
Clinical trialTMCO2
Miscellaneous
canSAR (ICR)TMCO2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO2
EVEXTMCO2
GoPubMedTMCO2
iHOPTMCO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:45:43 CEST 2017

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