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TMCO3 (transmembrane and coiled-coil domains 3)

Identity

Alias_namesC13orf11
chromosome 13 open reading frame 11
Alias_symbol (synonym)FLJ20623
Other alias
HGNC (Hugo) TMCO3
LocusID (NCBI) 55002
Atlas_Id 74753
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 114145308 and ends at 114204544 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHD2 (15q26.1) / TMCO3 (13q34)TFDP1 (13q34) / TMCO3 (13q34)TMCO3 (13q34) / GNGT1 (7q21.3)
TMCO3 (13q34) / KATNAL2 (18q21.1)TMCO3 (13q34) / MPDU1 (17p13.1)TMCO3 (13q34) / RBM14 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO3   20329
Cards
Entrez_Gene (NCBI)TMCO3  55002  transmembrane and coiled-coil domains 3
AliasesC13orf11
GeneCards (Weizmann)TMCO3
Ensembl hg19 (Hinxton)ENSG00000150403 [Gene_View]  chr13:114145308-114204544 [Contig_View]  TMCO3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150403 [Gene_View]  chr13:114145308-114204544 [Contig_View]  TMCO3 [Vega]
ICGC DataPortalENSG00000150403
TCGA cBioPortalTMCO3
AceView (NCBI)TMCO3
Genatlas (Paris)TMCO3
WikiGenes55002
SOURCE (Princeton)TMCO3
Genetics Home Reference (NIH)TMCO3
Genomic and cartography
GoldenPath hg19 (UCSC)TMCO3  -     chr13:114145308-114204544 +  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMCO3  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblTMCO3 - 13q34 [CytoView hg19]  TMCO3 - 13q34 [CytoView hg38]
Mapping of homologs : NCBITMCO3 [Mapview hg19]  TMCO3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF209505 AK000630 AK074415 AY358768 BC012564
RefSeq transcript (Entrez)NM_017905
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_027140 NW_004929390
Consensus coding sequences : CCDS (NCBI)TMCO3
Cluster EST : UnigeneHs.317593 [ NCBI ]
CGAP (NCI)Hs.317593
Alternative Splicing GalleryENSG00000150403
Gene ExpressionTMCO3 [ NCBI-GEO ]   TMCO3 [ EBI - ARRAY_EXPRESS ]   TMCO3 [ SEEK ]   TMCO3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55002
GTEX Portal (Tissue expression)TMCO3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWJ1
Splice isoforms : SwissVarQ6UWJ1
PhosPhoSitePlusQ6UWJ1
Domains : Interpro (EBI)Cation/H_exchanger   
Domain families : Pfam (Sanger)Na_H_Exchanger (PF00999)   
Domain families : Pfam (NCBI)pfam00999   
Conserved Domain (NCBI)TMCO3
DMDM Disease mutations55002
Blocks (Seattle)TMCO3
SuperfamilyQ6UWJ1
Human Protein AtlasENSG00000150403
Peptide AtlasQ6UWJ1
HPRD12612
IPIIPI00016665   IPI00787600   IPI00645612   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWJ1
IntAct (EBI)Q6UWJ1
FunCoupENSG00000150403
BioGRIDTMCO3
STRING (EMBL)TMCO3
ZODIACTMCO3
Ontologies - Pathways
QuickGOQ6UWJ1
Ontology : AmiGOsolute:proton antiporter activity  integral component of membrane  hydrogen ion transmembrane transport  
Ontology : EGO-EBIsolute:proton antiporter activity  integral component of membrane  hydrogen ion transmembrane transport  
NDEx NetworkTMCO3
Atlas of Cancer Signalling NetworkTMCO3
Wikipedia pathwaysTMCO3
Orthology - Evolution
OrthoDB55002
GeneTree (enSembl)ENSG00000150403
Phylogenetic Trees/Animal Genes : TreeFamTMCO3
HOVERGENQ6UWJ1
HOGENOMQ6UWJ1
Homologs : HomoloGeneTMCO3
Homology/Alignments : Family Browser (UCSC)TMCO3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO3
dbVarTMCO3
ClinVarTMCO3
1000_GenomesTMCO3 
Exome Variant ServerTMCO3
ExAC (Exome Aggregation Consortium)TMCO3 (select the gene name)
Genetic variants : HAPMAP55002
Genomic Variants (DGV)TMCO3 [DGVbeta]
DECIPHER (Syndromes)13:114145308-114204544  ENSG00000150403
CONAN: Copy Number AnalysisTMCO3 
Mutations
ICGC Data PortalTMCO3 
TCGA Data PortalTMCO3 
Broad Tumor PortalTMCO3
OASIS PortalTMCO3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCO3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO3
DgiDB (Drug Gene Interaction Database)TMCO3
DoCM (Curated mutations)TMCO3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO3 (select a term)
intoGenTMCO3
Cancer3DTMCO3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMCO3
Genetic Testing Registry TMCO3
NextProtQ6UWJ1 [Medical]
TSGene55002
GENETestsTMCO3
Huge Navigator TMCO3 [HugePedia]
snp3D : Map Gene to Disease55002
BioCentury BCIQTMCO3
ClinGenTMCO3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55002
Chemical/Pharm GKB GenePA134989495
Clinical trialTMCO3
Miscellaneous
canSAR (ICR)TMCO3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO3
EVEXTMCO3
GoPubMedTMCO3
iHOPTMCO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:48:18 CET 2017

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