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TMCO3 (transmembrane and coiled-coil domains 3)

Identity

Alias (NCBI)C13orf11
HGNC (Hugo) TMCO3
HGNC Alias symbFLJ20623
HGNC Previous nameC13orf11
HGNC Previous namechromosome 13 open reading frame 11
LocusID (NCBI) 55002
Atlas_Id 74753
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113491021 and ends at 113550229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHD2 (15q26.1) / TMCO3 (13q34)TFDP1 (13q34) / TMCO3 (13q34)TMCO3 (13q34) / GNGT1 (7q21.3)
TMCO3 (13q34) / KATNAL2 (18q21.1)TMCO3 (13q34) / MPDU1 (17p13.1)TMCO3 (13q34) / RBM14 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMCO3   20329
Cards
Entrez_Gene (NCBI)TMCO3    transmembrane and coiled-coil domains 3
AliasesC13orf11
GeneCards (Weizmann)TMCO3
Ensembl hg19 (Hinxton)ENSG00000150403 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150403 [Gene_View]  ENSG00000150403 [Sequence]  chr13:113491021-113550229 [Contig_View]  TMCO3 [Vega]
ICGC DataPortalENSG00000150403
TCGA cBioPortalTMCO3
AceView (NCBI)TMCO3
Genatlas (Paris)TMCO3
SOURCE (Princeton)TMCO3
Genetics Home Reference (NIH)TMCO3
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO3  -     chr13:113491021-113550229 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO3  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathTMCO3 - 13q34 [CytoView hg19]  TMCO3 - 13q34 [CytoView hg38]
ImmunoBaseENSG00000150403
Genome Data Viewer NCBITMCO3 [Mapview hg19]  
OMIM617134   
Gene and transcription
Genbank (Entrez)AF209505 AK000630 AK074415 AY358768 BC012564
RefSeq transcript (Entrez)NM_001349741 NM_001349742 NM_001349743 NM_001349744 NM_001349745 NM_001349746 NM_017905
Consensus coding sequences : CCDS (NCBI)TMCO3
Gene ExpressionTMCO3 [ NCBI-GEO ]   TMCO3 [ EBI - ARRAY_EXPRESS ]   TMCO3 [ SEEK ]   TMCO3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO3 [ Firebrowse - Broad ]
GenevisibleExpression of TMCO3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55002
GTEX Portal (Tissue expression)TMCO3
Human Protein AtlasENSG00000150403-TMCO3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWJ1
PhosPhoSitePlusQ6UWJ1
Domains : Interpro (EBI)Cation/H_exchanger    Na+/solute_symporter_sf   
Domain families : Pfam (Sanger)Na_H_Exchanger (PF00999)   
Domain families : Pfam (NCBI)pfam00999   
Conserved Domain (NCBI)TMCO3
SuperfamilyQ6UWJ1
AlphaFold pdb e-kbQ6UWJ1   
Human Protein Atlas [tissue]ENSG00000150403-TMCO3 [tissue]
HPRD12612
Protein Interaction databases
DIP (DOE-UCLA)Q6UWJ1
IntAct (EBI)Q6UWJ1
BioGRIDTMCO3
STRING (EMBL)TMCO3
ZODIACTMCO3
Ontologies - Pathways
QuickGOQ6UWJ1
Ontology : AmiGOsolute:proton antiporter activity  integral component of membrane  proton transmembrane transport  
Ontology : EGO-EBIsolute:proton antiporter activity  integral component of membrane  proton transmembrane transport  
NDEx NetworkTMCO3
Atlas of Cancer Signalling NetworkTMCO3
Wikipedia pathwaysTMCO3
Orthology - Evolution
OrthoDB55002
GeneTree (enSembl)ENSG00000150403
Phylogenetic Trees/Animal Genes : TreeFamTMCO3
Homologs : HomoloGeneTMCO3
Homology/Alignments : Family Browser (UCSC)TMCO3
Gene fusions - Rearrangements
Fusion : QuiverTMCO3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO3
dbVarTMCO3
ClinVarTMCO3
MonarchTMCO3
1000_GenomesTMCO3 
Exome Variant ServerTMCO3
GNOMAD BrowserENSG00000150403
Varsome BrowserTMCO3
ACMGTMCO3 variants
VarityQ6UWJ1
Genomic Variants (DGV)TMCO3 [DGVbeta]
DECIPHERTMCO3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO3 
Mutations
ICGC Data PortalTMCO3 
TCGA Data PortalTMCO3 
Broad Tumor PortalTMCO3
OASIS PortalTMCO3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMCO3
Mutations and Diseases : HGMDTMCO3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMCO3
DgiDB (Drug Gene Interaction Database)TMCO3
DoCM (Curated mutations)TMCO3
CIViC (Clinical Interpretations of Variants in Cancer)TMCO3
Cancer3DTMCO3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617134   
Orphanet
DisGeNETTMCO3
MedgenTMCO3
Genetic Testing Registry TMCO3
NextProtQ6UWJ1 [Medical]
GENETestsTMCO3
Target ValidationTMCO3
Huge Navigator TMCO3 [HugePedia]
ClinGenTMCO3
Clinical trials, drugs, therapy
MyCancerGenomeTMCO3
Protein Interactions : CTDTMCO3
Pharm GKB GenePA134989495
PharosQ6UWJ1
Clinical trialTMCO3
Miscellaneous
canSAR (ICR)TMCO3
HarmonizomeTMCO3
DataMed IndexTMCO3
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMCO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:40 CEST 2021

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