Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMCO4 (transmembrane and coiled-coil domains 4)

Identity

Alias (NCBI)-
HGNC (Hugo) TMCO4
HGNC Alias symbDKFZp686C23231
LocusID (NCBI) 255104
Atlas_Id 74754
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 19682213 and ends at 19799916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HP1BP3 (1p36.12) / TMCO4 (1p36.13)TMCO4 (1p36.13) / C1orf196 ()TMCO4 (1p36.13) / ERRFI1 (1p36.23)
TMCO4 (1p36.13) / PLA2G2A (1p36.13)TMCO4 C1orf196TMCO4 ERRFI1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMCO4   27393
Cards
Entrez_Gene (NCBI)TMCO4    transmembrane and coiled-coil domains 4
Aliases
GeneCards (Weizmann)TMCO4
Ensembl hg19 (Hinxton)ENSG00000162542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162542 [Gene_View]  ENSG00000162542 [Sequence]  chr1:19682213-19799916 [Contig_View]  TMCO4 [Vega]
ICGC DataPortalENSG00000162542
TCGA cBioPortalTMCO4
AceView (NCBI)TMCO4
Genatlas (Paris)TMCO4
SOURCE (Princeton)TMCO4
Genetics Home Reference (NIH)TMCO4
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO4  -     chr1:19682213-19799916 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO4  -     1p36.13   [Description]    (hg19-Feb_2009)
GoldenPathTMCO4 - 1p36.13 [CytoView hg19]  TMCO4 - 1p36.13 [CytoView hg38]
ImmunoBaseENSG00000162542
Genome Data Viewer NCBITMCO4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK127543 AK309310 AK309900 AL049846 AL049847
RefSeq transcript (Entrez)NM_001349112 NM_001349113 NM_001349114 NM_001349115 NM_181719
Consensus coding sequences : CCDS (NCBI)TMCO4
Gene ExpressionTMCO4 [ NCBI-GEO ]   TMCO4 [ EBI - ARRAY_EXPRESS ]   TMCO4 [ SEEK ]   TMCO4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO4 [ Firebrowse - Broad ]
GenevisibleExpression of TMCO4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255104
GTEX Portal (Tissue expression)TMCO4
Human Protein AtlasENSG00000162542-TMCO4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TGY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TGY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TGY1
PhosPhoSitePlusQ5TGY1
Domains : Interpro (EBI)AB_hydrolase    DUF726   
Domain families : Pfam (Sanger)DUF726 (PF05277)   
Domain families : Pfam (NCBI)pfam05277   
Conserved Domain (NCBI)TMCO4
SuperfamilyQ5TGY1
AlphaFold pdb e-kbQ5TGY1   
Human Protein Atlas [tissue]ENSG00000162542-TMCO4 [tissue]
HPRD14140
Protein Interaction databases
DIP (DOE-UCLA)Q5TGY1
IntAct (EBI)Q5TGY1
BioGRIDTMCO4
STRING (EMBL)TMCO4
ZODIACTMCO4
Ontologies - Pathways
QuickGOQ5TGY1
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMCO4
Atlas of Cancer Signalling NetworkTMCO4
Wikipedia pathwaysTMCO4
Orthology - Evolution
OrthoDB255104
GeneTree (enSembl)ENSG00000162542
Phylogenetic Trees/Animal Genes : TreeFamTMCO4
Homologs : HomoloGeneTMCO4
Homology/Alignments : Family Browser (UCSC)TMCO4
Gene fusions - Rearrangements
Fusion : QuiverTMCO4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO4
dbVarTMCO4
ClinVarTMCO4
MonarchTMCO4
1000_GenomesTMCO4 
Exome Variant ServerTMCO4
GNOMAD BrowserENSG00000162542
Varsome BrowserTMCO4
ACMGTMCO4 variants
VarityQ5TGY1
Genomic Variants (DGV)TMCO4 [DGVbeta]
DECIPHERTMCO4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO4 
Mutations
ICGC Data PortalTMCO4 
TCGA Data PortalTMCO4 
Broad Tumor PortalTMCO4
OASIS PortalTMCO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMCO4
Mutations and Diseases : HGMDTMCO4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMCO4
DgiDB (Drug Gene Interaction Database)TMCO4
DoCM (Curated mutations)TMCO4
CIViC (Clinical Interpretations of Variants in Cancer)TMCO4
Cancer3DTMCO4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMCO4
MedgenTMCO4
Genetic Testing Registry TMCO4
NextProtQ5TGY1 [Medical]
GENETestsTMCO4
Target ValidationTMCO4
Huge Navigator TMCO4 [HugePedia]
ClinGenTMCO4
Clinical trials, drugs, therapy
MyCancerGenomeTMCO4
Protein Interactions : CTDTMCO4
Pharm GKB GenePA142670794
PharosQ5TGY1
Clinical trialTMCO4
Miscellaneous
canSAR (ICR)TMCO4
HarmonizomeTMCO4
DataMed IndexTMCO4
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMCO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:41 CEST 2021

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