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TMCO4 (transmembrane and coiled-coil domains 4)

Identity

Alias_symbol (synonym)DKFZp686C23231
Other alias-
HGNC (Hugo) TMCO4
LocusID (NCBI) 255104
Atlas_Id 74754
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 19682213 and ends at 19800021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HP1BP3 (1p36.12) / TMCO4 (1p36.13)TMCO4 (1p36.13) / C1orf196 ()TMCO4 (1p36.13) / ERRFI1 (1p36.23)
TMCO4 (1p36.13) / PLA2G2A (1p36.13)TMCO4 C1orf196TMCO4 ERRFI1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO4   27393
Cards
Entrez_Gene (NCBI)TMCO4  255104  transmembrane and coiled-coil domains 4
Aliases
GeneCards (Weizmann)TMCO4
Ensembl hg19 (Hinxton)ENSG00000162542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162542 [Gene_View]  chr1:19682213-19800021 [Contig_View]  TMCO4 [Vega]
ICGC DataPortalENSG00000162542
TCGA cBioPortalTMCO4
AceView (NCBI)TMCO4
Genatlas (Paris)TMCO4
WikiGenes255104
SOURCE (Princeton)TMCO4
Genetics Home Reference (NIH)TMCO4
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO4  -     chr1:19682213-19800021 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO4  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblTMCO4 - 1p36.13 [CytoView hg19]  TMCO4 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBITMCO4 [Mapview hg19]  TMCO4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127543 AK309310 AK309900 AL049846 AL049847
RefSeq transcript (Entrez)NM_001349112 NM_001349113 NM_001349114 NM_001349115 NM_181719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO4
Cluster EST : UnigeneHs.656313 [ NCBI ]
CGAP (NCI)Hs.656313
Alternative Splicing GalleryENSG00000162542
Gene ExpressionTMCO4 [ NCBI-GEO ]   TMCO4 [ EBI - ARRAY_EXPRESS ]   TMCO4 [ SEEK ]   TMCO4 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255104
GTEX Portal (Tissue expression)TMCO4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TGY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TGY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TGY1
Splice isoforms : SwissVarQ5TGY1
PhosPhoSitePlusQ5TGY1
Domains : Interpro (EBI)AB_hydrolase    DUF726   
Domain families : Pfam (Sanger)DUF726 (PF05277)   
Domain families : Pfam (NCBI)pfam05277   
Conserved Domain (NCBI)TMCO4
DMDM Disease mutations255104
Blocks (Seattle)TMCO4
SuperfamilyQ5TGY1
Human Protein AtlasENSG00000162542
Peptide AtlasQ5TGY1
HPRD14140
IPIIPI00299169   IPI00000047   IPI00640043   
Protein Interaction databases
DIP (DOE-UCLA)Q5TGY1
IntAct (EBI)Q5TGY1
FunCoupENSG00000162542
BioGRIDTMCO4
STRING (EMBL)TMCO4
ZODIACTMCO4
Ontologies - Pathways
QuickGOQ5TGY1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMCO4
Atlas of Cancer Signalling NetworkTMCO4
Wikipedia pathwaysTMCO4
Orthology - Evolution
OrthoDB255104
GeneTree (enSembl)ENSG00000162542
Phylogenetic Trees/Animal Genes : TreeFamTMCO4
HOVERGENQ5TGY1
HOGENOMQ5TGY1
Homologs : HomoloGeneTMCO4
Homology/Alignments : Family Browser (UCSC)TMCO4
Gene fusions - Rearrangements
Fusion: TCGATMCO4 C1orf196
Fusion: TCGATMCO4 ERRFI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO4
dbVarTMCO4
ClinVarTMCO4
1000_GenomesTMCO4 
Exome Variant ServerTMCO4
ExAC (Exome Aggregation Consortium)TMCO4 (select the gene name)
Genetic variants : HAPMAP255104
Genomic Variants (DGV)TMCO4 [DGVbeta]
DECIPHERTMCO4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO4 
Mutations
ICGC Data PortalTMCO4 
TCGA Data PortalTMCO4 
Broad Tumor PortalTMCO4
OASIS PortalTMCO4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCO4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO4
DgiDB (Drug Gene Interaction Database)TMCO4
DoCM (Curated mutations)TMCO4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO4 (select a term)
intoGenTMCO4
Cancer3DTMCO4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMCO4
Genetic Testing Registry TMCO4
NextProtQ5TGY1 [Medical]
TSGene255104
GENETestsTMCO4
Huge Navigator TMCO4 [HugePedia]
snp3D : Map Gene to Disease255104
BioCentury BCIQTMCO4
ClinGenTMCO4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255104
Chemical/Pharm GKB GenePA142670794
Clinical trialTMCO4
Miscellaneous
canSAR (ICR)TMCO4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO4
EVEXTMCO4
GoPubMedTMCO4
iHOPTMCO4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:58:14 CEST 2017

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