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TMCO5A (transmembrane and coiled-coil domains 5A)

Identity

Alias (NCBI)TMCO5
HGNC (Hugo) TMCO5A
HGNC Alias symbMGC35118
HGNC Previous nameTMCO5
HGNC Previous nametransmembrane and coiled-coil domains 5
LocusID (NCBI) 145942
Atlas_Id 74755
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 37934607 and ends at 37951422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SPRED1 (15q14) / TMCO5A (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMCO5A   28558
Cards
Entrez_Gene (NCBI)TMCO5A    transmembrane and coiled-coil domains 5A
AliasesTMCO5
GeneCards (Weizmann)TMCO5A
Ensembl hg19 (Hinxton)ENSG00000166069 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166069 [Gene_View]  ENSG00000166069 [Sequence]  chr15:37934607-37951422 [Contig_View]  TMCO5A [Vega]
ICGC DataPortalENSG00000166069
TCGA cBioPortalTMCO5A
AceView (NCBI)TMCO5A
Genatlas (Paris)TMCO5A
SOURCE (Princeton)TMCO5A
Genetics Home Reference (NIH)TMCO5A
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO5A  -     chr15:37934607-37951422 +  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO5A  -     15q14   [Description]    (hg19-Feb_2009)
GoldenPathTMCO5A - 15q14 [CytoView hg19]  TMCO5A - 15q14 [CytoView hg38]
ImmunoBaseENSG00000166069
Genome Data Viewer NCBITMCO5A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093126 AK310517 BC029221 BI561792 BI826726
RefSeq transcript (Entrez)NM_001330255 NM_001370735 NM_001370736 NM_001370737 NM_152453
Consensus coding sequences : CCDS (NCBI)TMCO5A
Gene ExpressionTMCO5A [ NCBI-GEO ]   TMCO5A [ EBI - ARRAY_EXPRESS ]   TMCO5A [ SEEK ]   TMCO5A [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO5A [ Firebrowse - Broad ]
GenevisibleExpression of TMCO5A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145942
GTEX Portal (Tissue expression)TMCO5A
Human Protein AtlasENSG00000166069-TMCO5A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6Q1
PhosPhoSitePlusQ8N6Q1
Domains : Interpro (EBI)SMCO2/5   
Domain families : Pfam (Sanger)TMCO5 (PF14992)   
Domain families : Pfam (NCBI)pfam14992   
Conserved Domain (NCBI)TMCO5A
SuperfamilyQ8N6Q1
AlphaFold pdb e-kbQ8N6Q1   
Human Protein Atlas [tissue]ENSG00000166069-TMCO5A [tissue]
HPRD11341
Protein Interaction databases
DIP (DOE-UCLA)Q8N6Q1
IntAct (EBI)Q8N6Q1
BioGRIDTMCO5A
STRING (EMBL)TMCO5A
ZODIACTMCO5A
Ontologies - Pathways
QuickGOQ8N6Q1
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMCO5A
Atlas of Cancer Signalling NetworkTMCO5A
Wikipedia pathwaysTMCO5A
Orthology - Evolution
OrthoDB145942
GeneTree (enSembl)ENSG00000166069
Phylogenetic Trees/Animal Genes : TreeFamTMCO5A
Homologs : HomoloGeneTMCO5A
Homology/Alignments : Family Browser (UCSC)TMCO5A
Gene fusions - Rearrangements
Fusion : QuiverTMCO5A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO5A
dbVarTMCO5A
ClinVarTMCO5A
MonarchTMCO5A
1000_GenomesTMCO5A 
Exome Variant ServerTMCO5A
GNOMAD BrowserENSG00000166069
Varsome BrowserTMCO5A
ACMGTMCO5A variants
VarityQ8N6Q1
Genomic Variants (DGV)TMCO5A [DGVbeta]
DECIPHERTMCO5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO5A 
Mutations
ICGC Data PortalTMCO5A 
TCGA Data PortalTMCO5A 
Broad Tumor PortalTMCO5A
OASIS PortalTMCO5A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO5A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMCO5A
Mutations and Diseases : HGMDTMCO5A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMCO5A
DgiDB (Drug Gene Interaction Database)TMCO5A
DoCM (Curated mutations)TMCO5A
CIViC (Clinical Interpretations of Variants in Cancer)TMCO5A
Cancer3DTMCO5A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMCO5A
MedgenTMCO5A
Genetic Testing Registry TMCO5A
NextProtQ8N6Q1 [Medical]
GENETestsTMCO5A
Target ValidationTMCO5A
Huge Navigator TMCO5A [HugePedia]
ClinGenTMCO5A
Clinical trials, drugs, therapy
MyCancerGenomeTMCO5A
Protein Interactions : CTDTMCO5A
Pharm GKB GenePA162405808
PharosQ8N6Q1
Clinical trialTMCO5A
Miscellaneous
canSAR (ICR)TMCO5A
HarmonizomeTMCO5A
DataMed IndexTMCO5A
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMCO5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:41 CEST 2021

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