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TMCO5A (transmembrane and coiled-coil domains 5A)

Identity

Alias_namesTMCO5
transmembrane and coiled-coil domains 5
Alias_symbol (synonym)MGC35118
Other alias
HGNC (Hugo) TMCO5A
LocusID (NCBI) 145942
Atlas_Id 74755
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 37934607 and ends at 37967724 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPRED1 (15q14) / TMCO5A (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO5A   28558
Cards
Entrez_Gene (NCBI)TMCO5A  145942  transmembrane and coiled-coil domains 5A
AliasesTMCO5
GeneCards (Weizmann)TMCO5A
Ensembl hg19 (Hinxton)ENSG00000166069 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166069 [Gene_View]  chr15:37934607-37967724 [Contig_View]  TMCO5A [Vega]
ICGC DataPortalENSG00000166069
TCGA cBioPortalTMCO5A
AceView (NCBI)TMCO5A
Genatlas (Paris)TMCO5A
WikiGenes145942
SOURCE (Princeton)TMCO5A
Genetics Home Reference (NIH)TMCO5A
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO5A  -     chr15:37934607-37967724 +  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO5A  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblTMCO5A - 15q14 [CytoView hg19]  TMCO5A - 15q14 [CytoView hg38]
Mapping of homologs : NCBITMCO5A [Mapview hg19]  TMCO5A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093126 AK310517 BC029221 BI561792 BI826726
RefSeq transcript (Entrez)NM_001330255 NM_152453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO5A
Cluster EST : UnigeneHs.179646 [ NCBI ]
CGAP (NCI)Hs.179646
Alternative Splicing GalleryENSG00000166069
Gene ExpressionTMCO5A [ NCBI-GEO ]   TMCO5A [ EBI - ARRAY_EXPRESS ]   TMCO5A [ SEEK ]   TMCO5A [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO5A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145942
GTEX Portal (Tissue expression)TMCO5A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6Q1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6Q1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6Q1
Splice isoforms : SwissVarQ8N6Q1
PhosPhoSitePlusQ8N6Q1
Domains : Interpro (EBI)SMCO2/5   
Domain families : Pfam (Sanger)TMCO5 (PF14992)   
Domain families : Pfam (NCBI)pfam14992   
Conserved Domain (NCBI)TMCO5A
DMDM Disease mutations145942
Blocks (Seattle)TMCO5A
SuperfamilyQ8N6Q1
Human Protein AtlasENSG00000166069
Peptide AtlasQ8N6Q1
HPRD11341
IPIIPI00167051   IPI00867523   IPI01015037   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6Q1
IntAct (EBI)Q8N6Q1
FunCoupENSG00000166069
BioGRIDTMCO5A
STRING (EMBL)TMCO5A
ZODIACTMCO5A
Ontologies - Pathways
QuickGOQ8N6Q1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMCO5A
Atlas of Cancer Signalling NetworkTMCO5A
Wikipedia pathwaysTMCO5A
Orthology - Evolution
OrthoDB145942
GeneTree (enSembl)ENSG00000166069
Phylogenetic Trees/Animal Genes : TreeFamTMCO5A
HOVERGENQ8N6Q1
HOGENOMQ8N6Q1
Homologs : HomoloGeneTMCO5A
Homology/Alignments : Family Browser (UCSC)TMCO5A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO5A
dbVarTMCO5A
ClinVarTMCO5A
1000_GenomesTMCO5A 
Exome Variant ServerTMCO5A
ExAC (Exome Aggregation Consortium)TMCO5A (select the gene name)
Genetic variants : HAPMAP145942
Genomic Variants (DGV)TMCO5A [DGVbeta]
DECIPHERTMCO5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO5A 
Mutations
ICGC Data PortalTMCO5A 
TCGA Data PortalTMCO5A 
Broad Tumor PortalTMCO5A
OASIS PortalTMCO5A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO5A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCO5A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO5A
DgiDB (Drug Gene Interaction Database)TMCO5A
DoCM (Curated mutations)TMCO5A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO5A (select a term)
intoGenTMCO5A
Cancer3DTMCO5A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMCO5A
Genetic Testing Registry TMCO5A
NextProtQ8N6Q1 [Medical]
TSGene145942
GENETestsTMCO5A
Huge Navigator TMCO5A [HugePedia]
snp3D : Map Gene to Disease145942
BioCentury BCIQTMCO5A
ClinGenTMCO5A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145942
Chemical/Pharm GKB GenePA162405808
Clinical trialTMCO5A
Miscellaneous
canSAR (ICR)TMCO5A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO5A
EVEXTMCO5A
GoPubMedTMCO5A
iHOPTMCO5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:58:14 CEST 2017

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