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TMCO5B (transmembrane and coiled-coil domains 5B (pseudogene))

Identity

Alias_namestransmembrane and coiled-coil domains 5B
Other alias-
HGNC (Hugo) TMCO5B
LocusID (NCBI) 100652857
Atlas_Id 74756
Location 15q13.3  [Link to chromosome band 15q13]
Location_base_pair Starts at 33236476 and ends at 33247555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO5B   34243
Cards
Entrez_Gene (NCBI)TMCO5B  100652857  transmembrane and coiled-coil domains 5B (pseudogene)
Aliases
GeneCards (Weizmann)TMCO5B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:33236476-33247555 [Contig_View]  TMCO5B [Vega]
TCGA cBioPortalTMCO5B
AceView (NCBI)TMCO5B
Genatlas (Paris)TMCO5B
WikiGenes100652857
SOURCE (Princeton)TMCO5B
Genetics Home Reference (NIH)TMCO5B
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO5B  -     chr15:33236476-33247555 -  15q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO5B  -     15q13.3   [Description]    (hg19-Feb_2009)
EnsemblTMCO5B - 15q13.3 [CytoView hg19]  TMCO5B - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBITMCO5B [Mapview hg19]  TMCO5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098530 DB054691
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO5B
Cluster EST : UnigeneHs.439998 [ NCBI ]
CGAP (NCI)Hs.439998
Gene ExpressionTMCO5B [ NCBI-GEO ]   TMCO5B [ EBI - ARRAY_EXPRESS ]   TMCO5B [ SEEK ]   TMCO5B [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100652857
GTEX Portal (Tissue expression)TMCO5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYB1
Splice isoforms : SwissVarA8MYB1
PhosPhoSitePlusA8MYB1
Domains : Interpro (EBI)SMCO2/5   
Domain families : Pfam (Sanger)TMCO5 (PF14992)   
Domain families : Pfam (NCBI)pfam14992   
Conserved Domain (NCBI)TMCO5B
DMDM Disease mutations100652857
Blocks (Seattle)TMCO5B
SuperfamilyA8MYB1
Peptide AtlasA8MYB1
Protein Interaction databases
DIP (DOE-UCLA)A8MYB1
IntAct (EBI)A8MYB1
BioGRIDTMCO5B
STRING (EMBL)TMCO5B
ZODIACTMCO5B
Ontologies - Pathways
QuickGOA8MYB1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMCO5B
Atlas of Cancer Signalling NetworkTMCO5B
Wikipedia pathwaysTMCO5B
Orthology - Evolution
OrthoDB100652857
Phylogenetic Trees/Animal Genes : TreeFamTMCO5B
HOVERGENA8MYB1
HOGENOMA8MYB1
Homologs : HomoloGeneTMCO5B
Homology/Alignments : Family Browser (UCSC)TMCO5B
Gene fusions - Rearrangements
Fusion: Tumor Portal TMCO5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO5B
dbVarTMCO5B
ClinVarTMCO5B
1000_GenomesTMCO5B 
Exome Variant ServerTMCO5B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100652857
Genomic Variants (DGV)TMCO5B [DGVbeta]
DECIPHERTMCO5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO5B 
Mutations
ICGC Data PortalTMCO5B 
TCGA Data PortalTMCO5B 
Broad Tumor PortalTMCO5B
OASIS PortalTMCO5B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMCO5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO5B
DgiDB (Drug Gene Interaction Database)TMCO5B
DoCM (Curated mutations)TMCO5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO5B (select a term)
intoGenTMCO5B
Cancer3DTMCO5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMCO5B
Genetic Testing Registry TMCO5B
NextProtA8MYB1 [Medical]
TSGene100652857
GENETestsTMCO5B
Target ValidationTMCO5B
Huge Navigator TMCO5B [HugePedia]
snp3D : Map Gene to Disease100652857
BioCentury BCIQTMCO5B
ClinGenTMCO5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100652857
Chemical/Pharm GKB GenePA162405809
Clinical trialTMCO5B
Miscellaneous
canSAR (ICR)TMCO5B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO5B
EVEXTMCO5B
GoPubMedTMCO5B
iHOPTMCO5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:32:35 CET 2017

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