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TMCO5B (transmembrane and coiled-coil domains 5B (pseudogene))

Identity

Alias (NCBI)-
HGNC (Hugo) TMCO5B
HGNC Previous nametransmembrane and coiled-coil domains 5B
LocusID (NCBI) 100652857
Atlas_Id 74756
Location 15q13.3  [Link to chromosome band 15q13]
Location_base_pair Starts at 33236476 and ends at 33247555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMCO5B   34243
Cards
Entrez_Gene (NCBI)TMCO5B    transmembrane and coiled-coil domains 5B (pseudogene)
Aliases
GeneCards (Weizmann)TMCO5B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr15:33236476-33247555 [Contig_View]  TMCO5B [Vega]
TCGA cBioPortalTMCO5B
AceView (NCBI)TMCO5B
Genatlas (Paris)TMCO5B
SOURCE (Princeton)TMCO5B
Genetics Home Reference (NIH)TMCO5B
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO5B  -     chr15:33236476-33247555 -  15q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO5B  -     15q13.3   [Description]    (hg19-Feb_2009)
GoldenPathTMCO5B - 15q13.3 [CytoView hg19]  TMCO5B - 15q13.3 [CytoView hg38]
Genome Data Viewer NCBITMCO5B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK098530 DB054691
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO5B
Gene ExpressionTMCO5B [ NCBI-GEO ]   TMCO5B [ EBI - ARRAY_EXPRESS ]   TMCO5B [ SEEK ]   TMCO5B [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO5B [ Firebrowse - Broad ]
GenevisibleExpression of TMCO5B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100652857
GTEX Portal (Tissue expression)TMCO5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYB1
PhosPhoSitePlusA8MYB1
Domains : Interpro (EBI)SMCO2/5   
Domain families : Pfam (Sanger)TMCO5 (PF14992)   
Domain families : Pfam (NCBI)pfam14992   
Conserved Domain (NCBI)TMCO5B
SuperfamilyA8MYB1
AlphaFold pdb e-kbA8MYB1   
Protein Interaction databases
DIP (DOE-UCLA)A8MYB1
IntAct (EBI)A8MYB1
BioGRIDTMCO5B
STRING (EMBL)TMCO5B
ZODIACTMCO5B
Ontologies - Pathways
QuickGOA8MYB1
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMCO5B
Atlas of Cancer Signalling NetworkTMCO5B
Wikipedia pathwaysTMCO5B
Orthology - Evolution
OrthoDB100652857
Phylogenetic Trees/Animal Genes : TreeFamTMCO5B
Homologs : HomoloGeneTMCO5B
Homology/Alignments : Family Browser (UCSC)TMCO5B
Gene fusions - Rearrangements
Fusion : QuiverTMCO5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO5B
dbVarTMCO5B
ClinVarTMCO5B
MonarchTMCO5B
1000_GenomesTMCO5B 
Exome Variant ServerTMCO5B
Varsome BrowserTMCO5B
ACMGTMCO5B variants
VarityA8MYB1
Genomic Variants (DGV)TMCO5B [DGVbeta]
DECIPHERTMCO5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO5B 
Mutations
ICGC Data PortalTMCO5B 
TCGA Data PortalTMCO5B 
Broad Tumor PortalTMCO5B
OASIS PortalTMCO5B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMCO5B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMCO5B
DgiDB (Drug Gene Interaction Database)TMCO5B
DoCM (Curated mutations)TMCO5B
CIViC (Clinical Interpretations of Variants in Cancer)TMCO5B
Cancer3DTMCO5B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMCO5B
MedgenTMCO5B
Genetic Testing Registry TMCO5B
NextProtA8MYB1 [Medical]
GENETestsTMCO5B
Target ValidationTMCO5B
Huge Navigator TMCO5B [HugePedia]
ClinGenTMCO5B
Clinical trials, drugs, therapy
MyCancerGenomeTMCO5B
Protein Interactions : CTDTMCO5B
Pharm GKB GenePA162405809
PharosA8MYB1
Clinical trialTMCO5B
Miscellaneous
canSAR (ICR)TMCO5B
HarmonizomeTMCO5B
DataMed IndexTMCO5B
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMCO5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:41 CEST 2021

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