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TMCO6 (transmembrane and coiled-coil domains 6)

Identity

Alias_symbol (synonym)FLJ39769
PRO1580
Other alias
HGNC (Hugo) TMCO6
LocusID (NCBI) 55374
Atlas_Id 74757
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140639427 and ends at 140645408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HSPA9 (5q31.2) / TMCO6 (5q31.3)RPL11 (1p36.11) / TMCO6 (5q31.3)TMCO6 (5q31.3) / COL6A2 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMCO6   28814
Cards
Entrez_Gene (NCBI)TMCO6  55374  transmembrane and coiled-coil domains 6
AliasesPRO1580
GeneCards (Weizmann)TMCO6
Ensembl hg19 (Hinxton)ENSG00000113119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113119 [Gene_View]  chr5:140639427-140645408 [Contig_View]  TMCO6 [Vega]
ICGC DataPortalENSG00000113119
TCGA cBioPortalTMCO6
AceView (NCBI)TMCO6
Genatlas (Paris)TMCO6
WikiGenes55374
SOURCE (Princeton)TMCO6
Genetics Home Reference (NIH)TMCO6
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO6  -     chr5:140639427-140645408 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO6  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblTMCO6 - 5q31.3 [CytoView hg19]  TMCO6 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBITMCO6 [Mapview hg19]  TMCO6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA398902 AK097088 AK289495 AK301502 AK308722
RefSeq transcript (Entrez)NM_001300980 NM_001300982 NM_018502
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMCO6
Cluster EST : UnigeneHs.534333 [ NCBI ]
CGAP (NCI)Hs.534333
Alternative Splicing GalleryENSG00000113119
Gene ExpressionTMCO6 [ NCBI-GEO ]   TMCO6 [ EBI - ARRAY_EXPRESS ]   TMCO6 [ SEEK ]   TMCO6 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55374
GTEX Portal (Tissue expression)TMCO6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DC7
Splice isoforms : SwissVarQ96DC7
PhosPhoSitePlusQ96DC7
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    Importin-a_IBB   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)TMCO6
DMDM Disease mutations55374
Blocks (Seattle)TMCO6
SuperfamilyQ96DC7
Human Protein AtlasENSG00000113119
Peptide AtlasQ96DC7
HPRD15177
IPIIPI00644486   IPI00791699   IPI01015930   IPI00975607   IPI00908859   IPI00966928   IPI00965791   IPI01015587   
Protein Interaction databases
DIP (DOE-UCLA)Q96DC7
IntAct (EBI)Q96DC7
FunCoupENSG00000113119
BioGRIDTMCO6
STRING (EMBL)TMCO6
ZODIACTMCO6
Ontologies - Pathways
QuickGOQ96DC7
Ontology : AmiGOprotein binding  nucleus  cytoplasm  protein import into nucleus  protein transporter activity  integral component of membrane  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  protein import into nucleus  protein transporter activity  integral component of membrane  
NDEx NetworkTMCO6
Atlas of Cancer Signalling NetworkTMCO6
Wikipedia pathwaysTMCO6
Orthology - Evolution
OrthoDB55374
GeneTree (enSembl)ENSG00000113119
Phylogenetic Trees/Animal Genes : TreeFamTMCO6
HOVERGENQ96DC7
HOGENOMQ96DC7
Homologs : HomoloGeneTMCO6
Homology/Alignments : Family Browser (UCSC)TMCO6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO6
dbVarTMCO6
ClinVarTMCO6
1000_GenomesTMCO6 
Exome Variant ServerTMCO6
ExAC (Exome Aggregation Consortium)TMCO6 (select the gene name)
Genetic variants : HAPMAP55374
Genomic Variants (DGV)TMCO6 [DGVbeta]
DECIPHERTMCO6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO6 
Mutations
ICGC Data PortalTMCO6 
TCGA Data PortalTMCO6 
Broad Tumor PortalTMCO6
OASIS PortalTMCO6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMCO6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMCO6
DgiDB (Drug Gene Interaction Database)TMCO6
DoCM (Curated mutations)TMCO6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMCO6 (select a term)
intoGenTMCO6
Cancer3DTMCO6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMCO6
Genetic Testing Registry TMCO6
NextProtQ96DC7 [Medical]
TSGene55374
GENETestsTMCO6
Target ValidationTMCO6
Huge Navigator TMCO6 [HugePedia]
snp3D : Map Gene to Disease55374
BioCentury BCIQTMCO6
ClinGenTMCO6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55374
Chemical/Pharm GKB GenePA162405810
Clinical trialTMCO6
Miscellaneous
canSAR (ICR)TMCO6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMCO6
EVEXTMCO6
GoPubMedTMCO6
iHOPTMCO6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:44 CEST 2017

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