Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMCO6 (transmembrane and coiled-coil domains 6)

Identity

Alias (NCBI)PRO1580
HGNC (Hugo) TMCO6
HGNC Alias symbFLJ39769
PRO1580
LocusID (NCBI) 55374
Atlas_Id 74757
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140639427 and ends at 140645408 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HSPA9 (5q31.2) / TMCO6 (5q31.3)RPL11 (1p36.11) / TMCO6 (5q31.3)TMCO6 (5q31.3) / COL6A2 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMCO6   28814
Cards
Entrez_Gene (NCBI)TMCO6    transmembrane and coiled-coil domains 6
AliasesPRO1580
GeneCards (Weizmann)TMCO6
Ensembl hg19 (Hinxton)ENSG00000113119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113119 [Gene_View]  ENSG00000113119 [Sequence]  chr5:140639427-140645408 [Contig_View]  TMCO6 [Vega]
ICGC DataPortalENSG00000113119
TCGA cBioPortalTMCO6
AceView (NCBI)TMCO6
Genatlas (Paris)TMCO6
SOURCE (Princeton)TMCO6
Genetics Home Reference (NIH)TMCO6
Genomic and cartography
GoldenPath hg38 (UCSC)TMCO6  -     chr5:140639427-140645408 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMCO6  -     5q31.3   [Description]    (hg19-Feb_2009)
GoldenPathTMCO6 - 5q31.3 [CytoView hg19]  TMCO6 - 5q31.3 [CytoView hg38]
ImmunoBaseENSG00000113119
Genome Data Viewer NCBITMCO6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA398902 AK097088 AK289495 AK301502 AK308722
RefSeq transcript (Entrez)NM_001300980 NM_001300982 NM_018502
Consensus coding sequences : CCDS (NCBI)TMCO6
Gene ExpressionTMCO6 [ NCBI-GEO ]   TMCO6 [ EBI - ARRAY_EXPRESS ]   TMCO6 [ SEEK ]   TMCO6 [ MEM ]
Gene Expression Viewer (FireBrowse)TMCO6 [ Firebrowse - Broad ]
GenevisibleExpression of TMCO6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55374
GTEX Portal (Tissue expression)TMCO6
Human Protein AtlasENSG00000113119-TMCO6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DC7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DC7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DC7
PhosPhoSitePlusQ96DC7
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    Importin-a_IBB   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)TMCO6
SuperfamilyQ96DC7
AlphaFold pdb e-kbQ96DC7   
Human Protein Atlas [tissue]ENSG00000113119-TMCO6 [tissue]
HPRD15177
Protein Interaction databases
DIP (DOE-UCLA)Q96DC7
IntAct (EBI)Q96DC7
BioGRIDTMCO6
STRING (EMBL)TMCO6
ZODIACTMCO6
Ontologies - Pathways
QuickGOQ96DC7
Ontology : AmiGOprotein binding  protein import into nucleus  integral component of membrane  nuclear import signal receptor activity  
Ontology : EGO-EBIprotein binding  protein import into nucleus  integral component of membrane  nuclear import signal receptor activity  
NDEx NetworkTMCO6
Atlas of Cancer Signalling NetworkTMCO6
Wikipedia pathwaysTMCO6
Orthology - Evolution
OrthoDB55374
GeneTree (enSembl)ENSG00000113119
Phylogenetic Trees/Animal Genes : TreeFamTMCO6
Homologs : HomoloGeneTMCO6
Homology/Alignments : Family Browser (UCSC)TMCO6
Gene fusions - Rearrangements
Fusion : QuiverTMCO6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMCO6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMCO6
dbVarTMCO6
ClinVarTMCO6
MonarchTMCO6
1000_GenomesTMCO6 
Exome Variant ServerTMCO6
GNOMAD BrowserENSG00000113119
Varsome BrowserTMCO6
ACMGTMCO6 variants
VarityQ96DC7
Genomic Variants (DGV)TMCO6 [DGVbeta]
DECIPHERTMCO6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMCO6 
Mutations
ICGC Data PortalTMCO6 
TCGA Data PortalTMCO6 
Broad Tumor PortalTMCO6
OASIS PortalTMCO6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMCO6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMCO6
Mutations and Diseases : HGMDTMCO6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMCO6
DgiDB (Drug Gene Interaction Database)TMCO6
DoCM (Curated mutations)TMCO6
CIViC (Clinical Interpretations of Variants in Cancer)TMCO6
Cancer3DTMCO6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMCO6
MedgenTMCO6
Genetic Testing Registry TMCO6
NextProtQ96DC7 [Medical]
GENETestsTMCO6
Target ValidationTMCO6
Huge Navigator TMCO6 [HugePedia]
ClinGenTMCO6
Clinical trials, drugs, therapy
MyCancerGenomeTMCO6
Protein Interactions : CTDTMCO6
Pharm GKB GenePA162405810
PharosQ96DC7
Clinical trialTMCO6
Miscellaneous
canSAR (ICR)TMCO6
HarmonizomeTMCO6
DataMed IndexTMCO6
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMCO6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:41 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.