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TMED1 (transmembrane p24 trafficking protein 1)

Identity

Alias_namestransmembrane emp24 domain containing 1
transmembrane emp24 protein transport domain containing 1
Alias_symbol (synonym)ST2L
MGC1270
IL1RL1LG
Il1rl1l
p24gamma1
p24g1
Other aliasTp24
HGNC (Hugo) TMED1
LocusID (NCBI) 11018
Atlas_Id 74758
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10832067 and ends at 10836307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMED1   17291
Cards
Entrez_Gene (NCBI)TMED1  11018  transmembrane p24 trafficking protein 1
AliasesIL1RL1LG; Il1rl1l; Tp24; p24g1
GeneCards (Weizmann)TMED1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:10832067-10836307 [Contig_View]  TMED1 [Vega]
TCGA cBioPortalTMED1
AceView (NCBI)TMED1
Genatlas (Paris)TMED1
WikiGenes11018
SOURCE (Princeton)TMED1
Genetics Home Reference (NIH)TMED1
Genomic and cartography
GoldenPath hg38 (UCSC)TMED1  -     chr19:10832067-10836307 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMED1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblTMED1 - 19p13.2 [CytoView hg19]  TMED1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBITMED1 [Mapview hg19]  TMED1 [Mapview hg38]
OMIM605395   
Gene and transcription
Genbank (Entrez)AW389310 BC002443 BC018831 BF794897 BI793229
RefSeq transcript (Entrez)NM_006858
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMED1
Cluster EST : UnigeneHs.661691 [ NCBI ]
CGAP (NCI)Hs.661691
Gene ExpressionTMED1 [ NCBI-GEO ]   TMED1 [ EBI - ARRAY_EXPRESS ]   TMED1 [ SEEK ]   TMED1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11018
GTEX Portal (Tissue expression)TMED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13445   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13445  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13445
Splice isoforms : SwissVarQ13445
PhosPhoSitePlusQ13445
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)   
Domains : Interpro (EBI)GOLD_dom    TMP21-related   
Domain families : Pfam (Sanger)EMP24_GP25L (PF01105)   
Domain families : Pfam (NCBI)pfam01105   
Domain families : Smart (EMBL)EMP24_GP25L (SM01190)  
Conserved Domain (NCBI)TMED1
DMDM Disease mutations11018
Blocks (Seattle)TMED1
SuperfamilyQ13445
Peptide AtlasQ13445
HPRD05653
IPIIPI00009976   
Protein Interaction databases
DIP (DOE-UCLA)Q13445
IntAct (EBI)Q13445
BioGRIDTMED1
STRING (EMBL)TMED1
ZODIACTMED1
Ontologies - Pathways
QuickGOQ13445
Ontology : AmiGOreceptor binding  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  plasma membrane  signal transduction  cell-cell signaling  protein transport  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIreceptor binding  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  plasma membrane  signal transduction  cell-cell signaling  protein transport  integral component of membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  intracellular membrane-bounded organelle  
NDEx NetworkTMED1
Atlas of Cancer Signalling NetworkTMED1
Wikipedia pathwaysTMED1
Orthology - Evolution
OrthoDB11018
Phylogenetic Trees/Animal Genes : TreeFamTMED1
HOVERGENQ13445
HOGENOMQ13445
Homologs : HomoloGeneTMED1
Homology/Alignments : Family Browser (UCSC)TMED1
Gene fusions - Rearrangements
Fusion: Tumor Portal TMED1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMED1
dbVarTMED1
ClinVarTMED1
1000_GenomesTMED1 
Exome Variant ServerTMED1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP11018
Genomic Variants (DGV)TMED1 [DGVbeta]
DECIPHERTMED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMED1 
Mutations
ICGC Data PortalTMED1 
TCGA Data PortalTMED1 
Broad Tumor PortalTMED1
OASIS PortalTMED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMED1
DgiDB (Drug Gene Interaction Database)TMED1
DoCM (Curated mutations)TMED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMED1 (select a term)
intoGenTMED1
Cancer3DTMED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605395   
Orphanet
MedgenTMED1
Genetic Testing Registry TMED1
NextProtQ13445 [Medical]
TSGene11018
GENETestsTMED1
Target ValidationTMED1
Huge Navigator TMED1 [HugePedia]
snp3D : Map Gene to Disease11018
BioCentury BCIQTMED1
ClinGenTMED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11018
Chemical/Pharm GKB GenePA134972147
Clinical trialTMED1
Miscellaneous
canSAR (ICR)TMED1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMED1
EVEXTMED1
GoPubMedTMED1
iHOPTMED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:35 CET 2017

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