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TMED3 (transmembrane p24 trafficking protein 3)

Identity

Alias (NCBI)C15orf22
P24B
p24g4
p24gamma4
p26
HGNC (Hugo) TMED3
HGNC Alias symbp24B
p24gamma4
p24g4
HGNC Previous nameC15orf22
HGNC Previous namechromosome 15 open reading frame 22
 transmembrane emp24 domain containing 3
 transmembrane emp24 protein transport domain containing 3
LocusID (NCBI) 23423
Atlas_Id 53149
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 79311112 and ends at 79322840 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMED3 (15q25.1) / MCPH1 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMED3   28889
Cards
Entrez_Gene (NCBI)TMED3    transmembrane p24 trafficking protein 3
AliasesC15orf22; P24B; p24g4; p24gamma4; 
p26
GeneCards (Weizmann)TMED3
Ensembl hg19 (Hinxton)ENSG00000166557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166557 [Gene_View]  ENSG00000166557 [Sequence]  chr15:79311112-79322840 [Contig_View]  TMED3 [Vega]
ICGC DataPortalENSG00000166557
TCGA cBioPortalTMED3
AceView (NCBI)TMED3
Genatlas (Paris)TMED3
SOURCE (Princeton)TMED3
Genetics Home Reference (NIH)TMED3
Genomic and cartography
GoldenPath hg38 (UCSC)TMED3  -     chr15:79311112-79322840 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMED3  -     15q25.1   [Description]    (hg19-Feb_2009)
GoldenPathTMED3 - 15q25.1 [CytoView hg19]  TMED3 - 15q25.1 [CytoView hg38]
ImmunoBaseENSG00000166557
Genome Data Viewer NCBITMED3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI243096 AJ132270 AK075529 AK222516 AK289434
RefSeq transcript (Entrez)NM_001301203 NM_001330376 NM_001363735 NM_007364
Consensus coding sequences : CCDS (NCBI)TMED3
Gene ExpressionTMED3 [ NCBI-GEO ]   TMED3 [ EBI - ARRAY_EXPRESS ]   TMED3 [ SEEK ]   TMED3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMED3 [ Firebrowse - Broad ]
GenevisibleExpression of TMED3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23423
GTEX Portal (Tissue expression)TMED3
Human Protein AtlasENSG00000166557-TMED3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3Q3
PhosPhoSitePlusQ9Y3Q3
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)   
Domains : Interpro (EBI)Emp24-like    GOLD_dom    GOLD_dom_sf   
Domain families : Pfam (Sanger)EMP24_GP25L (PF01105)   
Domain families : Pfam (NCBI)pfam01105   
Domain families : Smart (EMBL)EMP24_GP25L (SM01190)  
Conserved Domain (NCBI)TMED3
SuperfamilyQ9Y3Q3
AlphaFold pdb e-kbQ9Y3Q3   
Human Protein Atlas [tissue]ENSG00000166557-TMED3 [tissue]
HPRD18200
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3Q3
IntAct (EBI)Q9Y3Q3
BioGRIDTMED3
STRING (EMBL)TMED3
ZODIACTMED3
Ontologies - Pathways
QuickGOQ9Y3Q3
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  Golgi apparatus  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  Golgi organization  integral component of membrane  COPI vesicle coat  COPI vesicle coat  transport vesicle  COPII-coated ER to Golgi transport vesicle  Golgi cisterna membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  Golgi apparatus  intracellular protein transport  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  Golgi organization  integral component of membrane  COPI vesicle coat  COPI vesicle coat  transport vesicle  COPII-coated ER to Golgi transport vesicle  Golgi cisterna membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  
NDEx NetworkTMED3
Atlas of Cancer Signalling NetworkTMED3
Wikipedia pathwaysTMED3
Orthology - Evolution
OrthoDB23423
GeneTree (enSembl)ENSG00000166557
Phylogenetic Trees/Animal Genes : TreeFamTMED3
Homologs : HomoloGeneTMED3
Homology/Alignments : Family Browser (UCSC)TMED3
Gene fusions - Rearrangements
Fusion : QuiverTMED3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMED3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMED3
dbVarTMED3
ClinVarTMED3
MonarchTMED3
1000_GenomesTMED3 
Exome Variant ServerTMED3
GNOMAD BrowserENSG00000166557
Varsome BrowserTMED3
ACMGTMED3 variants
VarityQ9Y3Q3
Genomic Variants (DGV)TMED3 [DGVbeta]
DECIPHERTMED3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMED3 
Mutations
ICGC Data PortalTMED3 
TCGA Data PortalTMED3 
Broad Tumor PortalTMED3
OASIS PortalTMED3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMED3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMED3
Mutations and Diseases : HGMDTMED3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMED3
DgiDB (Drug Gene Interaction Database)TMED3
DoCM (Curated mutations)TMED3
CIViC (Clinical Interpretations of Variants in Cancer)TMED3
Cancer3DTMED3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMED3
MedgenTMED3
Genetic Testing Registry TMED3
NextProtQ9Y3Q3 [Medical]
GENETestsTMED3
Target ValidationTMED3
Huge Navigator TMED3 [HugePedia]
ClinGenTMED3
Clinical trials, drugs, therapy
MyCancerGenomeTMED3
Protein Interactions : CTDTMED3
Pharm GKB GenePA134958958
PharosQ9Y3Q3
Clinical trialTMED3
Miscellaneous
canSAR (ICR)TMED3
HarmonizomeTMED3
DataMed IndexTMED3
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMED3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:21 CEST 2021

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