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TMED3 (transmembrane p24 trafficking protein 3)

Identity

Alias_namesC15orf22
chromosome 15 open reading frame 22
transmembrane emp24 domain containing 3
transmembrane emp24 protein transport domain containing 3
Alias_symbol (synonym)p24B
p24gamma4
p24g4
Other aliasP24B
p26
HGNC (Hugo) TMED3
LocusID (NCBI) 23423
Atlas_Id 53149
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 79603404 and ends at 79677061 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMED3 (15q25.1) / MCPH1 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMED3   28889
Cards
Entrez_Gene (NCBI)TMED3  23423  transmembrane p24 trafficking protein 3
AliasesC15orf22; P24B; p24g4; p26
GeneCards (Weizmann)TMED3
Ensembl hg19 (Hinxton)ENSG00000166557 [Gene_View]  chr15:79603404-79677061 [Contig_View]  TMED3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166557 [Gene_View]  chr15:79603404-79677061 [Contig_View]  TMED3 [Vega]
ICGC DataPortalENSG00000166557
TCGA cBioPortalTMED3
AceView (NCBI)TMED3
Genatlas (Paris)TMED3
WikiGenes23423
SOURCE (Princeton)TMED3
Genetics Home Reference (NIH)TMED3
Genomic and cartography
GoldenPath hg19 (UCSC)TMED3  -     chr15:79603404-79677061 +  15q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMED3  -     15q25.1   [Description]    (hg38-Dec_2013)
EnsemblTMED3 - 15q25.1 [CytoView hg19]  TMED3 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBITMED3 [Mapview hg19]  TMED3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI243096 AJ132270 AK075529 AK222516 AK289434
RefSeq transcript (Entrez)NM_001301203 NM_007364
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)TMED3
Cluster EST : UnigeneHs.665470 [ NCBI ]
CGAP (NCI)Hs.665470
Alternative Splicing GalleryENSG00000166557
Gene ExpressionTMED3 [ NCBI-GEO ]   TMED3 [ EBI - ARRAY_EXPRESS ]   TMED3 [ SEEK ]   TMED3 [ MEM ]
Gene Expression Viewer (FireBrowse)TMED3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23423
GTEX Portal (Tissue expression)TMED3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3Q3
Splice isoforms : SwissVarQ9Y3Q3
PhosPhoSitePlusQ9Y3Q3
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)   
Domains : Interpro (EBI)GOLD_dom    TMP21-related   
Domain families : Pfam (Sanger)EMP24_GP25L (PF01105)   
Domain families : Pfam (NCBI)pfam01105   
Conserved Domain (NCBI)TMED3
DMDM Disease mutations23423
Blocks (Seattle)TMED3
SuperfamilyQ9Y3Q3
Human Protein AtlasENSG00000166557
Peptide AtlasQ9Y3Q3
HPRD18200
IPIIPI00604599   IPI00909235   IPI00910639   IPI01011878   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3Q3
IntAct (EBI)Q9Y3Q3
FunCoupENSG00000166557
BioGRIDTMED3
STRING (EMBL)TMED3
ZODIACTMED3
Ontologies - Pathways
QuickGOQ9Y3Q3
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  protein transport  integral component of membrane  COPI vesicle coat  transport vesicle  Golgi cisterna membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  protein transport  integral component of membrane  COPI vesicle coat  transport vesicle  Golgi cisterna membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  
NDEx NetworkTMED3
Atlas of Cancer Signalling NetworkTMED3
Wikipedia pathwaysTMED3
Orthology - Evolution
OrthoDB23423
GeneTree (enSembl)ENSG00000166557
Phylogenetic Trees/Animal Genes : TreeFamTMED3
HOVERGENQ9Y3Q3
HOGENOMQ9Y3Q3
Homologs : HomoloGeneTMED3
Homology/Alignments : Family Browser (UCSC)TMED3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMED3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMED3
dbVarTMED3
ClinVarTMED3
1000_GenomesTMED3 
Exome Variant ServerTMED3
ExAC (Exome Aggregation Consortium)TMED3 (select the gene name)
Genetic variants : HAPMAP23423
Genomic Variants (DGV)TMED3 [DGVbeta]
DECIPHER (Syndromes)15:79603404-79677061  ENSG00000166557
CONAN: Copy Number AnalysisTMED3 
Mutations
ICGC Data PortalTMED3 
TCGA Data PortalTMED3 
Broad Tumor PortalTMED3
OASIS PortalTMED3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMED3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMED3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMED3
DgiDB (Drug Gene Interaction Database)TMED3
DoCM (Curated mutations)TMED3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMED3 (select a term)
intoGenTMED3
Cancer3DTMED3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMED3
Genetic Testing Registry TMED3
NextProtQ9Y3Q3 [Medical]
TSGene23423
GENETestsTMED3
Huge Navigator TMED3 [HugePedia]
snp3D : Map Gene to Disease23423
BioCentury BCIQTMED3
ClinGenTMED3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23423
Chemical/Pharm GKB GenePA134958958
Clinical trialTMED3
Miscellaneous
canSAR (ICR)TMED3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMED3
EVEXTMED3
GoPubMedTMED3
iHOPTMED3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:22:38 CEST 2017

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