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TMED7 (transmembrane p24 trafficking protein 7)

Identity

Alias_namestransmembrane emp24 protein transport domain containing 7
Alias_symbol (synonym)CGI-109
FLJ90481
p24gamma3
p24g3
Other aliasp27
HGNC (Hugo) TMED7
LocusID (NCBI) 51014
Atlas_Id 74765
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 115613208 and ends at 115626179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

ZODIAC
Nomenclature
HGNC (Hugo)TMED7   24253
Cards
Entrez_Gene (NCBI)TMED7  51014  transmembrane p24 trafficking protein 7
AliasesCGI-109; p24g3; p24gamma3; p27
GeneCards (Weizmann)TMED7
Ensembl hg19 (Hinxton)ENSG00000134970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134970 [Gene_View]  chr5:115613208-115626179 [Contig_View]  TMED7 [Vega]
ICGC DataPortalENSG00000134970
TCGA cBioPortalTMED7
AceView (NCBI)TMED7
Genatlas (Paris)TMED7
WikiGenes51014
SOURCE (Princeton)TMED7
Genetics Home Reference (NIH)TMED7
Genomic and cartography
GoldenPath hg38 (UCSC)TMED7  -     chr5:115613208-115626179 -  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMED7  -     5q22.3   [Description]    (hg19-Feb_2009)
EnsemblTMED7 - 5q22.3 [CytoView hg19]  TMED7 - 5q22.3 [CytoView hg38]
Mapping of homologs : NCBITMED7 [Mapview hg19]  TMED7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002450 AB002451 AK027512 AK074962 AK304210
RefSeq transcript (Entrez)NM_181836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMED7
Cluster EST : UnigeneHs.718838 [ NCBI ]
CGAP (NCI)Hs.718838
Alternative Splicing GalleryENSG00000134970
Gene ExpressionTMED7 [ NCBI-GEO ]   TMED7 [ EBI - ARRAY_EXPRESS ]   TMED7 [ SEEK ]   TMED7 [ MEM ]
Gene Expression Viewer (FireBrowse)TMED7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51014
GTEX Portal (Tissue expression)TMED7
Human Protein AtlasENSG00000134970-TMED7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3B3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3B3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3B3
Splice isoforms : SwissVarQ9Y3B3
PhosPhoSitePlusQ9Y3B3
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)   
Domains : Interpro (EBI)GOLD_dom    TMED7    TMP21-related   
Domain families : Pfam (Sanger)EMP24_GP25L (PF01105)   
Domain families : Pfam (NCBI)pfam01105   
Domain families : Smart (EMBL)EMP24_GP25L (SM01190)  
Conserved Domain (NCBI)TMED7
DMDM Disease mutations51014
Blocks (Seattle)TMED7
SuperfamilyQ9Y3B3
Human Protein Atlas [tissue]ENSG00000134970-TMED7 [tissue]
Peptide AtlasQ9Y3B3
HPRD13029
IPIIPI00926851   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3B3
IntAct (EBI)Q9Y3B3
FunCoupENSG00000134970
BioGRIDTMED7
STRING (EMBL)TMED7
TMED7
Ontologies - Pathways
QuickGOQ9Y3B3
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  protein transport  integral component of membrane  COPI vesicle coat  COPII vesicle coat  transport vesicle  endoplasmic reticulum-Golgi intermediate compartment membrane  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  protein transport  integral component of membrane  COPI vesicle coat  COPII vesicle coat  transport vesicle  endoplasmic reticulum-Golgi intermediate compartment membrane  extracellular exosome  
NDEx NetworkTMED7
Atlas of Cancer Signalling NetworkTMED7
Wikipedia pathwaysTMED7
Orthology - Evolution
OrthoDB51014
GeneTree (enSembl)ENSG00000134970
Phylogenetic Trees/Animal Genes : TreeFamTMED7
HOVERGENQ9Y3B3
HOGENOMQ9Y3B3
Homologs : HomoloGeneTMED7
Homology/Alignments : Family Browser (UCSC)TMED7
Gene fusions - Rearrangements
Fusion: Tumor Portal TMED7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMED7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMED7
dbVarTMED7
ClinVarTMED7
1000_GenomesTMED7 
Exome Variant ServerTMED7
ExAC (Exome Aggregation Consortium)ENSG00000134970
GNOMAD BrowserENSG00000134970
Genetic variants : HAPMAP51014
Genomic Variants (DGV)TMED7 [DGVbeta]
DECIPHERTMED7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMED7 
Mutations
ICGC Data PortalTMED7 
TCGA Data PortalTMED7 
Broad Tumor PortalTMED7
OASIS PortalTMED7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMED7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMED7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMED7
DgiDB (Drug Gene Interaction Database)TMED7
DoCM (Curated mutations)TMED7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMED7 (select a term)
intoGenTMED7
Cancer3DTMED7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMED7
Genetic Testing Registry TMED7
NextProtQ9Y3B3 [Medical]
TSGene51014
GENETestsTMED7
Target ValidationTMED7
Huge Navigator TMED7 [HugePedia]
snp3D : Map Gene to Disease51014
BioCentury BCIQTMED7
ClinGenTMED7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51014
Chemical/Pharm GKB GenePA134891536
Clinical trialTMED7
Miscellaneous
canSAR (ICR)TMED7 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMED7
EVEXTMED7
GoPubMedTMED7
iHOPTMED7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:36 CET 2017

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