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TMED8 (transmembrane p24 trafficking protein family member 8)

Identity

Alias (NCBI)FAM15B
HGNC (Hugo) TMED8
HGNC Previous nameFAM15B
HGNC Previous namefamily with sequence similarity 15, member B
 transmembrane emp24 domain containing 8
 transmembrane emp24 protein transport domain containing 8
LocusID (NCBI) 283578
Atlas_Id 74767
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77335029 and ends at 77377094 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMED8   18633
Cards
Entrez_Gene (NCBI)TMED8    transmembrane p24 trafficking protein family member 8
AliasesFAM15B
GeneCards (Weizmann)TMED8
Ensembl hg19 (Hinxton)ENSG00000100580 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100580 [Gene_View]  ENSG00000100580 [Sequence]  chr14:77335029-77377094 [Contig_View]  TMED8 [Vega]
ICGC DataPortalENSG00000100580
TCGA cBioPortalTMED8
AceView (NCBI)TMED8
Genatlas (Paris)TMED8
SOURCE (Princeton)TMED8
Genetics Home Reference (NIH)TMED8
Genomic and cartography
GoldenPath hg38 (UCSC)TMED8  -     chr14:77335029-77377094 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMED8  -     14q24.3   [Description]    (hg19-Feb_2009)
GoldenPathTMED8 - 14q24.3 [CytoView hg19]  TMED8 - 14q24.3 [CytoView hg38]
ImmunoBaseENSG00000100580
Genome Data Viewer NCBITMED8 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK025695 AK026855 AK095650 AY598329 BC101510
RefSeq transcript (Entrez)NM_001346131 NM_001346133 NM_001346134 NM_213601
Consensus coding sequences : CCDS (NCBI)TMED8
Gene ExpressionTMED8 [ NCBI-GEO ]   TMED8 [ EBI - ARRAY_EXPRESS ]   TMED8 [ SEEK ]   TMED8 [ MEM ]
Gene Expression Viewer (FireBrowse)TMED8 [ Firebrowse - Broad ]
GenevisibleExpression of TMED8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283578
GTEX Portal (Tissue expression)TMED8
Human Protein AtlasENSG00000100580-TMED8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PL24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PL24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PL24
PhosPhoSitePlusQ6PL24
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)   
Domains : Interpro (EBI)GOLD_dom    GOLD_dom_sf   
Domain families : Pfam (Sanger)GOLD_2 (PF13897)   
Domain families : Pfam (NCBI)pfam13897   
Conserved Domain (NCBI)TMED8
SuperfamilyQ6PL24
AlphaFold pdb e-kbQ6PL24   
Human Protein Atlas [tissue]ENSG00000100580-TMED8 [tissue]
HPRD18201
Protein Interaction databases
DIP (DOE-UCLA)Q6PL24
IntAct (EBI)Q6PL24
BioGRIDTMED8
STRING (EMBL)TMED8
ZODIACTMED8
Ontologies - Pathways
QuickGOQ6PL24
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTMED8
Atlas of Cancer Signalling NetworkTMED8
Wikipedia pathwaysTMED8
Orthology - Evolution
OrthoDB283578
GeneTree (enSembl)ENSG00000100580
Phylogenetic Trees/Animal Genes : TreeFamTMED8
Homologs : HomoloGeneTMED8
Homology/Alignments : Family Browser (UCSC)TMED8
Gene fusions - Rearrangements
Fusion : QuiverTMED8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMED8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMED8
dbVarTMED8
ClinVarTMED8
MonarchTMED8
1000_GenomesTMED8 
Exome Variant ServerTMED8
GNOMAD BrowserENSG00000100580
Varsome BrowserTMED8
ACMGTMED8 variants
VarityQ6PL24
Genomic Variants (DGV)TMED8 [DGVbeta]
DECIPHERTMED8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMED8 
Mutations
ICGC Data PortalTMED8 
TCGA Data PortalTMED8 
Broad Tumor PortalTMED8
OASIS PortalTMED8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMED8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMED8
Mutations and Diseases : HGMDTMED8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMED8
DgiDB (Drug Gene Interaction Database)TMED8
DoCM (Curated mutations)TMED8
CIViC (Clinical Interpretations of Variants in Cancer)TMED8
Cancer3DTMED8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMED8
MedgenTMED8
Genetic Testing Registry TMED8
NextProtQ6PL24 [Medical]
GENETestsTMED8
Target ValidationTMED8
Huge Navigator TMED8 [HugePedia]
ClinGenTMED8
Clinical trials, drugs, therapy
MyCancerGenomeTMED8
Protein Interactions : CTDTMED8
Pharm GKB GenePA134948632
PharosQ6PL24
Clinical trialTMED8
Miscellaneous
canSAR (ICR)TMED8
HarmonizomeTMED8
DataMed IndexTMED8
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMED8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:43 CEST 2021

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