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TMED9 (transmembrane p24 trafficking protein 9)

Identity

Alias_namestransmembrane emp24 protein transport domain containing 9
Alias_symbol (synonym)HSGP25L2G
p24alpha2
p24a2
Other aliasGMP25
p25
HGNC (Hugo) TMED9
LocusID (NCBI) 54732
Atlas_Id 74768
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 177592148 and ends at 177597242 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJC21 (5p13.2) / TMED9 (5q35.3)TMED9 (5q35.3) / AQP3 (9p13.3)ZFP36L1 (14q24.1) / TMED9 (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMED9   24878
Cards
Entrez_Gene (NCBI)TMED9  54732  transmembrane p24 trafficking protein 9
AliasesGMP25; HSGP25L2G; p24a2; p24alpha2; 
p25
GeneCards (Weizmann)TMED9
Ensembl hg19 (Hinxton)ENSG00000184840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184840 [Gene_View]  chr5:177592148-177597242 [Contig_View]  TMED9 [Vega]
ICGC DataPortalENSG00000184840
TCGA cBioPortalTMED9
AceView (NCBI)TMED9
Genatlas (Paris)TMED9
WikiGenes54732
SOURCE (Princeton)TMED9
Genetics Home Reference (NIH)TMED9
Genomic and cartography
GoldenPath hg38 (UCSC)TMED9  -     chr5:177592148-177597242 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMED9  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblTMED9 - 5q35.3 [CytoView hg19]  TMED9 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBITMED9 [Mapview hg19]  TMED9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF441399 AK298435 AK313292 BC001123 BG830564
RefSeq transcript (Entrez)NM_017510
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMED9
Cluster EST : UnigeneHs.279929 [ NCBI ]
CGAP (NCI)Hs.279929
Alternative Splicing GalleryENSG00000184840
Gene ExpressionTMED9 [ NCBI-GEO ]   TMED9 [ EBI - ARRAY_EXPRESS ]   TMED9 [ SEEK ]   TMED9 [ MEM ]
Gene Expression Viewer (FireBrowse)TMED9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54732
GTEX Portal (Tissue expression)TMED9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVK6
Splice isoforms : SwissVarQ9BVK6
PhosPhoSitePlusQ9BVK6
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)   
Domains : Interpro (EBI)GOLD_dom    TMP21-related   
Domain families : Pfam (Sanger)EMP24_GP25L (PF01105)   
Domain families : Pfam (NCBI)pfam01105   
Domain families : Smart (EMBL)EMP24_GP25L (SM01190)  
Conserved Domain (NCBI)TMED9
DMDM Disease mutations54732
Blocks (Seattle)TMED9
SuperfamilyQ9BVK6
Human Protein AtlasENSG00000184840
Peptide AtlasQ9BVK6
HPRD09975
IPIIPI00023542   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVK6
IntAct (EBI)Q9BVK6
FunCoupENSG00000184840
BioGRIDTMED9
STRING (EMBL)TMED9
ZODIACTMED9
Ontologies - Pathways
QuickGOQ9BVK6
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  positive regulation of organelle organization  integral component of membrane  syntaxin binding  transport vesicle  trans-Golgi network transport vesicle  protein exit from endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment membrane  early endosome to Golgi transport  COPI coating of Golgi vesicle  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  ER to Golgi vesicle-mediated transport  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  positive regulation of organelle organization  integral component of membrane  syntaxin binding  transport vesicle  trans-Golgi network transport vesicle  protein exit from endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment membrane  early endosome to Golgi transport  COPI coating of Golgi vesicle  extracellular exosome  
NDEx NetworkTMED9
Atlas of Cancer Signalling NetworkTMED9
Wikipedia pathwaysTMED9
Orthology - Evolution
OrthoDB54732
GeneTree (enSembl)ENSG00000184840
Phylogenetic Trees/Animal Genes : TreeFamTMED9
HOVERGENQ9BVK6
HOGENOMQ9BVK6
Homologs : HomoloGeneTMED9
Homology/Alignments : Family Browser (UCSC)TMED9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMED9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMED9
dbVarTMED9
ClinVarTMED9
1000_GenomesTMED9 
Exome Variant ServerTMED9
ExAC (Exome Aggregation Consortium)TMED9 (select the gene name)
Genetic variants : HAPMAP54732
Genomic Variants (DGV)TMED9 [DGVbeta]
DECIPHERTMED9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMED9 
Mutations
ICGC Data PortalTMED9 
TCGA Data PortalTMED9 
Broad Tumor PortalTMED9
OASIS PortalTMED9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMED9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMED9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMED9
DgiDB (Drug Gene Interaction Database)TMED9
DoCM (Curated mutations)TMED9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMED9 (select a term)
intoGenTMED9
Cancer3DTMED9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMED9
Genetic Testing Registry TMED9
NextProtQ9BVK6 [Medical]
TSGene54732
GENETestsTMED9
Target ValidationTMED9
Huge Navigator TMED9 [HugePedia]
snp3D : Map Gene to Disease54732
BioCentury BCIQTMED9
ClinGenTMED9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54732
Chemical/Pharm GKB GenePA134881976
Clinical trialTMED9
Miscellaneous
canSAR (ICR)TMED9 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMED9
EVEXTMED9
GoPubMedTMED9
iHOPTMED9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:36 CEST 2017

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