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TMEM104 (transmembrane protein 104)

Identity

Alias_symbol (synonym)FLJ20255
FLJ00021
Other alias-
HGNC (Hugo) TMEM104
LocusID (NCBI) 54868
Atlas_Id 54704
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 72772622 and ends at 72835922 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ENDOV (17q25.3) / TMEM104 (17q25.1)KCTD2 (17q25.1) / TMEM104 (17q25.1)TMEM104 (17q25.1) / CDK12 (17q12)
TMEM104 (17q25.1) / DNAI2 (17q25.1)TMEM104 (17q25.1) / NF1 (17q11.2)TMEM104 (17q25.1) / PPP2R4 (9q34.11)
TMEM104 (17q25.1) / RAB37 (17q25.1)TMEM104 (17q25.1) / SLC9A3R1 (17q25.1)TRPM7 (15q21.2) / TMEM104 (17q25.1)
ENDOV 17q25.3 / TMEM104 17q25.1KCTD2 17q25.1 / TMEM104 17q25.1TMEM104 17q25.1 / DNAI2 17q25.1
TMEM104 17q25.1 / RAB37 17q25.1TRPM7 15q21.2 / TMEM104 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM104   25984
Cards
Entrez_Gene (NCBI)TMEM104  54868  transmembrane protein 104
Aliases
GeneCards (Weizmann)TMEM104
Ensembl hg19 (Hinxton)ENSG00000109066 [Gene_View]  chr17:72772622-72835922 [Contig_View]  TMEM104 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109066 [Gene_View]  chr17:72772622-72835922 [Contig_View]  TMEM104 [Vega]
ICGC DataPortalENSG00000109066
TCGA cBioPortalTMEM104
AceView (NCBI)TMEM104
Genatlas (Paris)TMEM104
WikiGenes54868
SOURCE (Princeton)TMEM104
Genetics Home Reference (NIH)TMEM104
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM104  -     chr17:72772622-72835922 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM104  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblTMEM104 - 17q25.1 [CytoView hg19]  TMEM104 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBITMEM104 [Mapview hg19]  TMEM104 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000262 AK074029 AK291159 AK296621 AL137521
RefSeq transcript (Entrez)NM_001321264 NM_017728
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)TMEM104
Cluster EST : UnigeneHs.370262 [ NCBI ]
CGAP (NCI)Hs.370262
Alternative Splicing GalleryENSG00000109066
Gene ExpressionTMEM104 [ NCBI-GEO ]   TMEM104 [ EBI - ARRAY_EXPRESS ]   TMEM104 [ SEEK ]   TMEM104 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM104 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54868
GTEX Portal (Tissue expression)TMEM104
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NE00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NE00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NE00
Splice isoforms : SwissVarQ8NE00
PhosPhoSitePlusQ8NE00
Domains : Interpro (EBI)AA_transpt_TM   
Domain families : Pfam (Sanger)Aa_trans (PF01490)   
Domain families : Pfam (NCBI)pfam01490   
Conserved Domain (NCBI)TMEM104
DMDM Disease mutations54868
Blocks (Seattle)TMEM104
SuperfamilyQ8NE00
Human Protein AtlasENSG00000109066
Peptide AtlasQ8NE00
HPRD07888
IPIIPI00291835   IPI00793242   IPI01017994   
Protein Interaction databases
DIP (DOE-UCLA)Q8NE00
IntAct (EBI)Q8NE00
FunCoupENSG00000109066
BioGRIDTMEM104
STRING (EMBL)TMEM104
ZODIACTMEM104
Ontologies - Pathways
QuickGOQ8NE00
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkTMEM104
Atlas of Cancer Signalling NetworkTMEM104
Wikipedia pathwaysTMEM104
Orthology - Evolution
OrthoDB54868
GeneTree (enSembl)ENSG00000109066
Phylogenetic Trees/Animal Genes : TreeFamTMEM104
HOVERGENQ8NE00
HOGENOMQ8NE00
Homologs : HomoloGeneTMEM104
Homology/Alignments : Family Browser (UCSC)TMEM104
Gene fusions - Rearrangements
Fusion : MitelmanENDOV/TMEM104 [17q25.3/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanKCTD2/TMEM104 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanTMEM104/CDK12 [17q25.1/17q12]  [t(17;17)(q12;q25)]  
Fusion : MitelmanTMEM104/DNAI2 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanTMEM104/RAB37 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanTRPM7/TMEM104 [15q21.2/17q25.1]  [t(15;17)(q21;q25)]  
Fusion: TCGAENDOV 17q25.3 TMEM104 17q25.1 KIRC
Fusion: TCGAKCTD2 17q25.1 TMEM104 17q25.1 LUAD
Fusion: TCGATMEM104 17q25.1 DNAI2 17q25.1 BRCA
Fusion: TCGATMEM104 17q25.1 RAB37 17q25.1 LUAD
Fusion: TCGATRPM7 15q21.2 TMEM104 17q25.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM104 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM104
dbVarTMEM104
ClinVarTMEM104
1000_GenomesTMEM104 
Exome Variant ServerTMEM104
ExAC (Exome Aggregation Consortium)TMEM104 (select the gene name)
Genetic variants : HAPMAP54868
Genomic Variants (DGV)TMEM104 [DGVbeta]
DECIPHER (Syndromes)17:72772622-72835922  ENSG00000109066
CONAN: Copy Number AnalysisTMEM104 
Mutations
ICGC Data PortalTMEM104 
TCGA Data PortalTMEM104 
Broad Tumor PortalTMEM104
OASIS PortalTMEM104 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM104  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM104
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM104
DgiDB (Drug Gene Interaction Database)TMEM104
DoCM (Curated mutations)TMEM104 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM104 (select a term)
intoGenTMEM104
Cancer3DTMEM104(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM104
Genetic Testing Registry TMEM104
NextProtQ8NE00 [Medical]
TSGene54868
GENETestsTMEM104
Huge Navigator TMEM104 [HugePedia]
snp3D : Map Gene to Disease54868
BioCentury BCIQTMEM104
ClinGenTMEM104
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54868
Chemical/Pharm GKB GenePA142670753
Clinical trialTMEM104
Miscellaneous
canSAR (ICR)TMEM104 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM104
EVEXTMEM104
GoPubMedTMEM104
iHOPTMEM104
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:22 CET 2017

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