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TMEM106A (transmembrane protein 106A)

Identity

Alias_symbol (synonym)MGC20235
Other alias-
HGNC (Hugo) TMEM106A
LocusID (NCBI) 113277
Atlas_Id 55486
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43211827 and ends at 43220037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM106A (17q21.31) / NMT1 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM106A   28288
Cards
Entrez_Gene (NCBI)TMEM106A  113277  transmembrane protein 106A
Aliases
GeneCards (Weizmann)TMEM106A
Ensembl hg19 (Hinxton)ENSG00000184988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184988 [Gene_View]  chr17:43211827-43220037 [Contig_View]  TMEM106A [Vega]
ICGC DataPortalENSG00000184988
TCGA cBioPortalTMEM106A
AceView (NCBI)TMEM106A
Genatlas (Paris)TMEM106A
WikiGenes113277
SOURCE (Princeton)TMEM106A
Genetics Home Reference (NIH)TMEM106A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM106A  -     chr17:43211827-43220037 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM106A  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblTMEM106A - 17q21.31 [CytoView hg19]  TMEM106A - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBITMEM106A [Mapview hg19]  TMEM106A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056132 AK290387 AK299974 AK301571 BC012139
RefSeq transcript (Entrez)NM_001291586 NM_001291587 NM_001291588 NM_145041
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM106A
Cluster EST : UnigeneHs.536474 [ NCBI ]
CGAP (NCI)Hs.536474
Alternative Splicing GalleryENSG00000184988
Gene ExpressionTMEM106A [ NCBI-GEO ]   TMEM106A [ EBI - ARRAY_EXPRESS ]   TMEM106A [ SEEK ]   TMEM106A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM106A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113277
GTEX Portal (Tissue expression)TMEM106A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A25
Splice isoforms : SwissVarQ96A25
PhosPhoSitePlusQ96A25
Domains : Interpro (EBI)DUF1356_TMEM106   
Domain families : Pfam (Sanger)DUF1356 (PF07092)   
Domain families : Pfam (NCBI)pfam07092   
Conserved Domain (NCBI)TMEM106A
DMDM Disease mutations113277
Blocks (Seattle)TMEM106A
SuperfamilyQ96A25
Human Protein AtlasENSG00000184988
Peptide AtlasQ96A25
HPRD11315
IPIIPI00059187   IPI01010765   IPI00888458   
Protein Interaction databases
DIP (DOE-UCLA)Q96A25
IntAct (EBI)Q96A25
FunCoupENSG00000184988
BioGRIDTMEM106A
STRING (EMBL)TMEM106A
ZODIACTMEM106A
Ontologies - Pathways
QuickGOQ96A25
Ontology : AmiGOmolecular_function  biological_process  membrane  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  membrane  integral component of membrane  extracellular exosome  
NDEx NetworkTMEM106A
Atlas of Cancer Signalling NetworkTMEM106A
Wikipedia pathwaysTMEM106A
Orthology - Evolution
OrthoDB113277
GeneTree (enSembl)ENSG00000184988
Phylogenetic Trees/Animal Genes : TreeFamTMEM106A
HOVERGENQ96A25
HOGENOMQ96A25
Homologs : HomoloGeneTMEM106A
Homology/Alignments : Family Browser (UCSC)TMEM106A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM106A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM106A
dbVarTMEM106A
ClinVarTMEM106A
1000_GenomesTMEM106A 
Exome Variant ServerTMEM106A
ExAC (Exome Aggregation Consortium)TMEM106A (select the gene name)
Genetic variants : HAPMAP113277
Genomic Variants (DGV)TMEM106A [DGVbeta]
DECIPHERTMEM106A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM106A 
Mutations
ICGC Data PortalTMEM106A 
TCGA Data PortalTMEM106A 
Broad Tumor PortalTMEM106A
OASIS PortalTMEM106A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM106A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM106A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM106A
DgiDB (Drug Gene Interaction Database)TMEM106A
DoCM (Curated mutations)TMEM106A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM106A (select a term)
intoGenTMEM106A
Cancer3DTMEM106A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM106A
Genetic Testing Registry TMEM106A
NextProtQ96A25 [Medical]
TSGene113277
GENETestsTMEM106A
Target ValidationTMEM106A
Huge Navigator TMEM106A [HugePedia]
snp3D : Map Gene to Disease113277
BioCentury BCIQTMEM106A
ClinGenTMEM106A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113277
Chemical/Pharm GKB GenePA142670755
Clinical trialTMEM106A
Miscellaneous
canSAR (ICR)TMEM106A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM106A
EVEXTMEM106A
GoPubMedTMEM106A
iHOPTMEM106A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:35:19 CEST 2017

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