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TMEM106C (transmembrane protein 106C)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM106C
HGNC Alias symbMGC5576
LocusID (NCBI) 79022
Atlas_Id 74774
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 47963547 and ends at 47968878 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COPB2 (3q23) / TMEM106C (12q13.11)NDUFAF5 (20p12.1) / TMEM106C (12q13.11)TMEM106C (12q13.11) / IFRD2 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM106C   28775
Cards
Entrez_Gene (NCBI)TMEM106C    transmembrane protein 106C
Aliases
GeneCards (Weizmann)TMEM106C
Ensembl hg19 (Hinxton)ENSG00000134291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134291 [Gene_View]  ENSG00000134291 [Sequence]  chr12:47963547-47968878 [Contig_View]  TMEM106C [Vega]
ICGC DataPortalENSG00000134291
TCGA cBioPortalTMEM106C
AceView (NCBI)TMEM106C
Genatlas (Paris)TMEM106C
SOURCE (Princeton)TMEM106C
Genetics Home Reference (NIH)TMEM106C
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM106C  -     chr12:47963547-47968878 +  12q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM106C  -     12q13.11   [Description]    (hg19-Feb_2009)
GoldenPathTMEM106C - 12q13.11 [CytoView hg19]  TMEM106C - 12q13.11 [CytoView hg38]
ImmunoBaseENSG00000134291
Genome Data Viewer NCBITMEM106C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK299154 AK310035 AK313698 BC000854 BC107792
RefSeq transcript (Entrez)NM_001143841 NM_001143842 NM_001143843 NM_001143844 NM_001143845 NM_024056
Consensus coding sequences : CCDS (NCBI)TMEM106C
Gene ExpressionTMEM106C [ NCBI-GEO ]   TMEM106C [ EBI - ARRAY_EXPRESS ]   TMEM106C [ SEEK ]   TMEM106C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM106C [ Firebrowse - Broad ]
GenevisibleExpression of TMEM106C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79022
GTEX Portal (Tissue expression)TMEM106C
Human Protein AtlasENSG00000134291-TMEM106C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVX2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVX2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVX2
PhosPhoSitePlusQ9BVX2
Domains : Interpro (EBI)DUF1356_TMEM106   
Domain families : Pfam (Sanger)DUF1356 (PF07092)   
Domain families : Pfam (NCBI)pfam07092   
Conserved Domain (NCBI)TMEM106C
SuperfamilyQ9BVX2
AlphaFold pdb e-kbQ9BVX2   
Human Protein Atlas [tissue]ENSG00000134291-TMEM106C [tissue]
HPRD14690
Protein Interaction databases
DIP (DOE-UCLA)Q9BVX2
IntAct (EBI)Q9BVX2
BioGRIDTMEM106C
STRING (EMBL)TMEM106C
ZODIACTMEM106C
Ontologies - Pathways
QuickGOQ9BVX2
Ontology : AmiGOmolecular_function  protein binding  cellular_component  endoplasmic reticulum membrane  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  endoplasmic reticulum membrane  biological_process  integral component of membrane  
NDEx NetworkTMEM106C
Atlas of Cancer Signalling NetworkTMEM106C
Wikipedia pathwaysTMEM106C
Orthology - Evolution
OrthoDB79022
GeneTree (enSembl)ENSG00000134291
Phylogenetic Trees/Animal Genes : TreeFamTMEM106C
Homologs : HomoloGeneTMEM106C
Homology/Alignments : Family Browser (UCSC)TMEM106C
Gene fusions - Rearrangements
Fusion : QuiverTMEM106C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM106C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM106C
dbVarTMEM106C
ClinVarTMEM106C
MonarchTMEM106C
1000_GenomesTMEM106C 
Exome Variant ServerTMEM106C
GNOMAD BrowserENSG00000134291
Varsome BrowserTMEM106C
ACMGTMEM106C variants
VarityQ9BVX2
Genomic Variants (DGV)TMEM106C [DGVbeta]
DECIPHERTMEM106C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM106C 
Mutations
ICGC Data PortalTMEM106C 
TCGA Data PortalTMEM106C 
Broad Tumor PortalTMEM106C
OASIS PortalTMEM106C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM106C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM106C
Mutations and Diseases : HGMDTMEM106C
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM106C
DgiDB (Drug Gene Interaction Database)TMEM106C
DoCM (Curated mutations)TMEM106C
CIViC (Clinical Interpretations of Variants in Cancer)TMEM106C
Cancer3DTMEM106C
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM106C
MedgenTMEM106C
Genetic Testing Registry TMEM106C
NextProtQ9BVX2 [Medical]
GENETestsTMEM106C
Target ValidationTMEM106C
Huge Navigator TMEM106C [HugePedia]
ClinGenTMEM106C
Clinical trials, drugs, therapy
MyCancerGenomeTMEM106C
Protein Interactions : CTDTMEM106C
Pharm GKB GenePA142670757
PharosQ9BVX2
Clinical trialTMEM106C
Miscellaneous
canSAR (ICR)TMEM106C
HarmonizomeTMEM106C
DataMed IndexTMEM106C
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM106C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:43 CEST 2021

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