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TMEM107 (transmembrane protein 107)

Identity

Alias_symbol (synonym)MGC10744
Other aliasGRVS638
PRO1268
HGNC (Hugo) TMEM107
LocusID (NCBI) 84314
Atlas_Id 74775
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8172979 and ends at 8176396 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM107 (17p13.1) / MBP (18q23)TMEM107 (17p13.1) / PGK1 (Xq21.1)TMEM107 (17p13.1) / SLC35A2 (Xp11.23)
TMEM107 (17p13.1) / SLC4A1AP (2p23.3)TMEM107 (17p13.1) / WRAP53 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM107   28128
Cards
Entrez_Gene (NCBI)TMEM107  84314  transmembrane protein 107
AliasesGRVS638; PRO1268
GeneCards (Weizmann)TMEM107
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:8172979-8176396 [Contig_View]  TMEM107 [Vega]
TCGA cBioPortalTMEM107
AceView (NCBI)TMEM107
Genatlas (Paris)TMEM107
WikiGenes84314
SOURCE (Princeton)TMEM107
Genetics Home Reference (NIH)TMEM107
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM107  -     chr17:8172979-8176396 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM107  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM107 - 17p13.1 [CytoView hg19]  TMEM107 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITMEM107 [Mapview hg19]  TMEM107 [Mapview hg38]
OMIM616183   
Gene and transcription
Genbank (Entrez)AF311338 AK027813 AK127891 AK315666 AY358525
RefSeq transcript (Entrez)NM_001351278 NM_001351279 NM_001351280 NM_032354 NM_183065
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM107
Cluster EST : UnigeneHs.513933 [ NCBI ]
CGAP (NCI)Hs.513933
Gene ExpressionTMEM107 [ NCBI-GEO ]   TMEM107 [ EBI - ARRAY_EXPRESS ]   TMEM107 [ SEEK ]   TMEM107 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84314
GTEX Portal (Tissue expression)TMEM107
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX40
Splice isoforms : SwissVarQ6UX40
PhosPhoSitePlusQ6UX40
Domains : Interpro (EBI)TMEM107   
Domain families : Pfam (Sanger)TMEM107 (PF14995)   
Domain families : Pfam (NCBI)pfam14995   
Conserved Domain (NCBI)TMEM107
DMDM Disease mutations84314
Blocks (Seattle)TMEM107
SuperfamilyQ6UX40
Peptide AtlasQ6UX40
HPRD14400
IPIIPI00375611   IPI00444212   IPI00789637   IPI00414448   IPI00896556   IPI01009131   IPI00789332   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX40
IntAct (EBI)Q6UX40
BioGRIDTMEM107
STRING (EMBL)TMEM107
ZODIACTMEM107
Ontologies - Pathways
QuickGOQ6UX40
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  neural tube patterning  ciliary transition zone  embryonic digit morphogenesis  cilium assembly  protein localization to ciliary transition zone  non-motile cilium assembly  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  neural tube patterning  ciliary transition zone  embryonic digit morphogenesis  cilium assembly  protein localization to ciliary transition zone  non-motile cilium assembly  
NDEx NetworkTMEM107
Atlas of Cancer Signalling NetworkTMEM107
Wikipedia pathwaysTMEM107
Orthology - Evolution
OrthoDB84314
Phylogenetic Trees/Animal Genes : TreeFamTMEM107
HOVERGENQ6UX40
HOGENOMQ6UX40
Homologs : HomoloGeneTMEM107
Homology/Alignments : Family Browser (UCSC)TMEM107
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM107
dbVarTMEM107
ClinVarTMEM107
1000_GenomesTMEM107 
Exome Variant ServerTMEM107
ExAC (Exome Aggregation Consortium)TMEM107 (select the gene name)
Genetic variants : HAPMAP84314
Genomic Variants (DGV)TMEM107 [DGVbeta]
DECIPHERTMEM107 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM107 
Mutations
ICGC Data PortalTMEM107 
TCGA Data PortalTMEM107 
Broad Tumor PortalTMEM107
OASIS PortalTMEM107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM107  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM107
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM107
DgiDB (Drug Gene Interaction Database)TMEM107
DoCM (Curated mutations)TMEM107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM107 (select a term)
intoGenTMEM107
Cancer3DTMEM107(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616183   
Orphanet
MedgenTMEM107
Genetic Testing Registry TMEM107
NextProtQ6UX40 [Medical]
TSGene84314
GENETestsTMEM107
Huge Navigator TMEM107 [HugePedia]
snp3D : Map Gene to Disease84314
BioCentury BCIQTMEM107
ClinGenTMEM107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84314
Chemical/Pharm GKB GenePA142670758
Clinical trialTMEM107
Miscellaneous
canSAR (ICR)TMEM107 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM107
EVEXTMEM107
GoPubMedTMEM107
iHOPTMEM107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:58:17 CEST 2017

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