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TMEM11 (transmembrane protein 11)

Identity

Alias_namesC17orf35
chromosome 17 open reading frame 35
Alias_symbol (synonym)PMI
PM1
Other alias
HGNC (Hugo) TMEM11
LocusID (NCBI) 8834
Atlas_Id 74778
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21197950 and ends at 21214595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPECC1 (17p11.2) / TMEM11 (17p11.2)TMEM11 (17p11.2) / BOD1L1 (4p15.33)TMEM11 (17p11.2) / RARA (17q21.2)
TMEM11 (17p11.2) / SLC43A2 (17p13.3)TMEM11 (17p11.2) / UBAP1 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM11   16823
Cards
Entrez_Gene (NCBI)TMEM11  8834  transmembrane protein 11
AliasesC17orf35; PM1; PMI
GeneCards (Weizmann)TMEM11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:21197950-21214595 [Contig_View]  TMEM11 [Vega]
TCGA cBioPortalTMEM11
AceView (NCBI)TMEM11
Genatlas (Paris)TMEM11
WikiGenes8834
SOURCE (Princeton)TMEM11
Genetics Home Reference (NIH)TMEM11
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM11  -     chr17:21197950-21214595 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM11  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM11 - 17p11.2 [CytoView hg19]  TMEM11 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM11 [Mapview hg19]  TMEM11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311965 BC002819 BC005268 BC020815 BC035874
RefSeq transcript (Entrez)NM_003876
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM11
Cluster EST : UnigeneHs.592945 [ NCBI ]
CGAP (NCI)Hs.592945
Gene ExpressionTMEM11 [ NCBI-GEO ]   TMEM11 [ EBI - ARRAY_EXPRESS ]   TMEM11 [ SEEK ]   TMEM11 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8834
GTEX Portal (Tissue expression)TMEM11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17152   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17152  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17152
Splice isoforms : SwissVarP17152
PhosPhoSitePlusP17152
Domains : Interpro (EBI)TMEM11   
Domain families : Pfam (Sanger)Mito_morph_reg (PF14972)   
Domain families : Pfam (NCBI)pfam14972   
Conserved Domain (NCBI)TMEM11
DMDM Disease mutations8834
Blocks (Seattle)TMEM11
SuperfamilyP17152
Peptide AtlasP17152
HPRD12680
IPIIPI00012855   
Protein Interaction databases
DIP (DOE-UCLA)P17152
IntAct (EBI)P17152
BioGRIDTMEM11
STRING (EMBL)TMEM11
ZODIACTMEM11
Ontologies - Pathways
QuickGOP17152
Ontology : AmiGOmolecular_function  protein binding  mitochondrion  integral component of plasma membrane  mitochondrion organization  integral component of mitochondrial inner membrane  
Ontology : EGO-EBImolecular_function  protein binding  mitochondrion  integral component of plasma membrane  mitochondrion organization  integral component of mitochondrial inner membrane  
NDEx NetworkTMEM11
Atlas of Cancer Signalling NetworkTMEM11
Wikipedia pathwaysTMEM11
Orthology - Evolution
OrthoDB8834
Phylogenetic Trees/Animal Genes : TreeFamTMEM11
HOVERGENP17152
HOGENOMP17152
Homologs : HomoloGeneTMEM11
Homology/Alignments : Family Browser (UCSC)TMEM11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM11
dbVarTMEM11
ClinVarTMEM11
1000_GenomesTMEM11 
Exome Variant ServerTMEM11
ExAC (Exome Aggregation Consortium)TMEM11 (select the gene name)
Genetic variants : HAPMAP8834
Genomic Variants (DGV)TMEM11 [DGVbeta]
DECIPHERTMEM11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM11 
Mutations
ICGC Data PortalTMEM11 
TCGA Data PortalTMEM11 
Broad Tumor PortalTMEM11
OASIS PortalTMEM11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TMEM11
DgiDB (Drug Gene Interaction Database)TMEM11
DoCM (Curated mutations)TMEM11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM11 (select a term)
intoGenTMEM11
Cancer3DTMEM11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM11
Genetic Testing Registry TMEM11
NextProtP17152 [Medical]
TSGene8834
GENETestsTMEM11
Target ValidationTMEM11
Huge Navigator TMEM11 [HugePedia]
snp3D : Map Gene to Disease8834
BioCentury BCIQTMEM11
ClinGenTMEM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8834
Chemical/Pharm GKB GenePA134893886
Clinical trialTMEM11
Miscellaneous
canSAR (ICR)TMEM11 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM11
EVEXTMEM11
GoPubMedTMEM11
iHOPTMEM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:48 CEST 2017

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