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TMEM110 (transmembrane protein 110)

Identity

Alias_symbol (synonym)MGC52022
Other aliasSTIMATE
HGNC (Hugo) TMEM110
LocusID (NCBI) 375346
Atlas_Id 54706
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52870772 and ends at 52931597 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM110 (3p21.1) / TP63 (3q28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM110   30526
Cards
Entrez_Gene (NCBI)TMEM110  375346  transmembrane protein 110
AliasesSTIMATE
GeneCards (Weizmann)TMEM110
Ensembl hg19 (Hinxton)ENSG00000213533 [Gene_View]  chr3:52870772-52931597 [Contig_View]  TMEM110 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213533 [Gene_View]  chr3:52870772-52931597 [Contig_View]  TMEM110 [Vega]
ICGC DataPortalENSG00000213533
TCGA cBioPortalTMEM110
AceView (NCBI)TMEM110
Genatlas (Paris)TMEM110
WikiGenes375346
SOURCE (Princeton)TMEM110
Genetics Home Reference (NIH)TMEM110
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM110  -     chr3:52870772-52931597 -  3p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM110  -     3p21.1   [Description]    (hg38-Dec_2013)
EnsemblTMEM110 - 3p21.1 [CytoView hg19]  TMEM110 - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBITMEM110 [Mapview hg19]  TMEM110 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094932 AK124386 AY726591 BC022209 BC047015
RefSeq transcript (Entrez)NM_198563
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)TMEM110
Cluster EST : UnigeneHs.744189 [ NCBI ]
CGAP (NCI)Hs.744189
Alternative Splicing GalleryENSG00000213533
Gene ExpressionTMEM110 [ NCBI-GEO ]   TMEM110 [ EBI - ARRAY_EXPRESS ]   TMEM110 [ SEEK ]   TMEM110 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM110 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375346
GTEX Portal (Tissue expression)TMEM110
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TL2
Splice isoforms : SwissVarQ86TL2
PhosPhoSitePlusQ86TL2
Domains : Interpro (EBI)STIMATE   
Domain families : Pfam (Sanger)DUF3661 (PF12400)   
Domain families : Pfam (NCBI)pfam12400   
Conserved Domain (NCBI)TMEM110
DMDM Disease mutations375346
Blocks (Seattle)TMEM110
SuperfamilyQ86TL2
Human Protein AtlasENSG00000213533
Peptide AtlasQ86TL2
HPRD14675
IPIIPI00047164   IPI00946101   IPI00947178   IPI00947359   IPI00964178   IPI00478648   
Protein Interaction databases
DIP (DOE-UCLA)Q86TL2
IntAct (EBI)Q86TL2
FunCoupENSG00000213533
BioGRIDTMEM110
STRING (EMBL)TMEM110
ZODIACTMEM110
Ontologies - Pathways
QuickGOQ86TL2
Ontology : AmiGOmolecular_function  calcium channel regulator activity  protein binding  cellular_component  endoplasmic reticulum membrane  biological_process  integral component of membrane  activation of store-operated calcium channel activity  cortical endoplasmic reticulum  calcium-mediated signaling using intracellular calcium source  positive regulation of NFAT protein import into nucleus  
Ontology : EGO-EBImolecular_function  calcium channel regulator activity  protein binding  cellular_component  endoplasmic reticulum membrane  biological_process  integral component of membrane  activation of store-operated calcium channel activity  cortical endoplasmic reticulum  calcium-mediated signaling using intracellular calcium source  positive regulation of NFAT protein import into nucleus  
NDEx NetworkTMEM110
Atlas of Cancer Signalling NetworkTMEM110
Wikipedia pathwaysTMEM110
Orthology - Evolution
OrthoDB375346
GeneTree (enSembl)ENSG00000213533
Phylogenetic Trees/Animal Genes : TreeFamTMEM110
HOVERGENQ86TL2
HOGENOMQ86TL2
Homologs : HomoloGeneTMEM110
Homology/Alignments : Family Browser (UCSC)TMEM110
Gene fusions - Rearrangements
Fusion : MitelmanTMEM110/TP63 [3p21.1/3q28]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM110 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM110
dbVarTMEM110
ClinVarTMEM110
1000_GenomesTMEM110 
Exome Variant ServerTMEM110
ExAC (Exome Aggregation Consortium)TMEM110 (select the gene name)
Genetic variants : HAPMAP375346
Genomic Variants (DGV)TMEM110 [DGVbeta]
DECIPHER (Syndromes)3:52870772-52931597  ENSG00000213533
CONAN: Copy Number AnalysisTMEM110 
Mutations
ICGC Data PortalTMEM110 
TCGA Data PortalTMEM110 
Broad Tumor PortalTMEM110
OASIS PortalTMEM110 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM110  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM110
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM110
DgiDB (Drug Gene Interaction Database)TMEM110
DoCM (Curated mutations)TMEM110 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM110 (select a term)
intoGenTMEM110
Cancer3DTMEM110(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM110
Genetic Testing Registry TMEM110
NextProtQ86TL2 [Medical]
TSGene375346
GENETestsTMEM110
Huge Navigator TMEM110 [HugePedia]
snp3D : Map Gene to Disease375346
BioCentury BCIQTMEM110
ClinGenTMEM110
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375346
Chemical/Pharm GKB GenePA142670761
Clinical trialTMEM110
Miscellaneous
canSAR (ICR)TMEM110 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM110
EVEXTMEM110
GoPubMedTMEM110
iHOPTMEM110
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:23 CET 2017

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