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TMEM120A (transmembrane protein 120A)

Identity

Alias (NCBI)NET29
TMPIT
HGNC (Hugo) TMEM120A
HGNC Alias symbTMPIT
NET29
LocusID (NCBI) 83862
Atlas_Id 42591
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75986831 and ends at 75994595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASB6 (9q34.11) / TMEM120A (7q11.23)STYXL1 (7q11.23) / TMEM120A (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM120A   21697
Cards
Entrez_Gene (NCBI)TMEM120A    transmembrane protein 120A
AliasesNET29; TMPIT
GeneCards (Weizmann)TMEM120A
Ensembl hg19 (Hinxton)ENSG00000189077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189077 [Gene_View]  ENSG00000189077 [Sequence]  chr7:75986831-75994595 [Contig_View]  TMEM120A [Vega]
ICGC DataPortalENSG00000189077
TCGA cBioPortalTMEM120A
AceView (NCBI)TMEM120A
Genatlas (Paris)TMEM120A
SOURCE (Princeton)TMEM120A
Genetics Home Reference (NIH)TMEM120A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM120A  -     chr7:75986831-75994595 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM120A  -     7q11.23   [Description]    (hg19-Feb_2009)
GoldenPathTMEM120A - 7q11.23 [CytoView hg19]  TMEM120A - 7q11.23 [CytoView hg38]
ImmunoBaseENSG00000189077
Genome Data Viewer NCBITMEM120A [Mapview hg19]  
OMIM616550   
Gene and transcription
Genbank (Entrez)AF327923 AI806931 AL522284 BC029487 BC040694
RefSeq transcript (Entrez)NM_001317803 NM_001363462 NM_031925
Consensus coding sequences : CCDS (NCBI)TMEM120A
Gene ExpressionTMEM120A [ NCBI-GEO ]   TMEM120A [ EBI - ARRAY_EXPRESS ]   TMEM120A [ SEEK ]   TMEM120A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM120A [ Firebrowse - Broad ]
GenevisibleExpression of TMEM120A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83862
GTEX Portal (Tissue expression)TMEM120A
Human Protein AtlasENSG00000189077-TMEM120A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ8
PhosPhoSitePlusQ9BXJ8
Domains : Interpro (EBI)TACAN/TMEM120B   
Domain families : Pfam (Sanger)TMPIT (PF07851)   
Domain families : Pfam (NCBI)pfam07851   
Conserved Domain (NCBI)TMEM120A
SuperfamilyQ9BXJ8
AlphaFold pdb e-kbQ9BXJ8   
Human Protein Atlas [tissue]ENSG00000189077-TMEM120A [tissue]
HPRD15543
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ8
IntAct (EBI)Q9BXJ8
BioGRIDTMEM120A
STRING (EMBL)TMEM120A
ZODIACTMEM120A
Ontologies - Pathways
QuickGOQ9BXJ8
Ontology : AmiGOmolecular_function  ion channel activity  protein binding  cellular_component  nuclear inner membrane  plasma membrane  membrane  integral component of membrane  ion transmembrane transport  fat cell differentiation  fat cell differentiation  detection of mechanical stimulus involved in sensory perception of pain  protein homooligomerization  protein heterooligomerization  
Ontology : EGO-EBImolecular_function  ion channel activity  protein binding  cellular_component  nuclear inner membrane  plasma membrane  membrane  integral component of membrane  ion transmembrane transport  fat cell differentiation  fat cell differentiation  detection of mechanical stimulus involved in sensory perception of pain  protein homooligomerization  protein heterooligomerization  
NDEx NetworkTMEM120A
Atlas of Cancer Signalling NetworkTMEM120A
Wikipedia pathwaysTMEM120A
Orthology - Evolution
OrthoDB83862
GeneTree (enSembl)ENSG00000189077
Phylogenetic Trees/Animal Genes : TreeFamTMEM120A
Homologs : HomoloGeneTMEM120A
Homology/Alignments : Family Browser (UCSC)TMEM120A
Gene fusions - Rearrangements
Fusion : QuiverTMEM120A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM120A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM120A
dbVarTMEM120A
ClinVarTMEM120A
MonarchTMEM120A
1000_GenomesTMEM120A 
Exome Variant ServerTMEM120A
GNOMAD BrowserENSG00000189077
Varsome BrowserTMEM120A
ACMGTMEM120A variants
VarityQ9BXJ8
Genomic Variants (DGV)TMEM120A [DGVbeta]
DECIPHERTMEM120A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM120A 
Mutations
ICGC Data PortalTMEM120A 
TCGA Data PortalTMEM120A 
Broad Tumor PortalTMEM120A
OASIS PortalTMEM120A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM120A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM120A
Mutations and Diseases : HGMDTMEM120A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM120A
DgiDB (Drug Gene Interaction Database)TMEM120A
DoCM (Curated mutations)TMEM120A
CIViC (Clinical Interpretations of Variants in Cancer)TMEM120A
Cancer3DTMEM120A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616550   
Orphanet
DisGeNETTMEM120A
MedgenTMEM120A
Genetic Testing Registry TMEM120A
NextProtQ9BXJ8 [Medical]
GENETestsTMEM120A
Target ValidationTMEM120A
Huge Navigator TMEM120A [HugePedia]
ClinGenTMEM120A
Clinical trials, drugs, therapy
MyCancerGenomeTMEM120A
Protein Interactions : CTDTMEM120A
Pharm GKB GenePA162405861
PharosQ9BXJ8
Clinical trialTMEM120A
Miscellaneous
canSAR (ICR)TMEM120A
HarmonizomeTMEM120A
DataMed IndexTMEM120A
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM120A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:23 CEST 2021

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