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TMEM121B (transmembrane protein 121B)

Identity

Alias_namesCECR6
cat eye syndrome chromosome region, candidate 6
Other alias
HGNC (Hugo) TMEM121B
LocusID (NCBI) 27439
Atlas_Id 79750
Location 22q11.1  [Link to chromosome band 22q11]
Location_base_pair Starts at 17116299 and ends at 17121367 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TMEM121B   1844
Cards
Entrez_Gene (NCBI)TMEM121B  27439  transmembrane protein 121B
AliasesCECR6
GeneCards (Weizmann)TMEM121B
Ensembl hg19 (Hinxton)ENSG00000183307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183307 [Gene_View]  chr22:17116299-17121367 [Contig_View]  TMEM121B [Vega]
ICGC DataPortalENSG00000183307
TCGA cBioPortalTMEM121B
AceView (NCBI)TMEM121B
Genatlas (Paris)TMEM121B
WikiGenes27439
SOURCE (Princeton)TMEM121B
Genetics Home Reference (NIH)TMEM121B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM121B  -     chr22:17116299-17121367 -  22q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM121B  -     22q11.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM121B - 22q11.1 [CytoView hg19]  TMEM121B - 22q11.1 [CytoView hg38]
Mapping of homologs : NCBITMEM121B [Mapview hg19]  TMEM121B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF307451 AK055398 AK095437 AK095609 BG472529
RefSeq transcript (Entrez)NM_001163079 NM_031890
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM121B
Cluster EST : UnigeneHs.209577 [ NCBI ]
CGAP (NCI)Hs.209577
Alternative Splicing GalleryENSG00000183307
Gene ExpressionTMEM121B [ NCBI-GEO ]   TMEM121B [ EBI - ARRAY_EXPRESS ]   TMEM121B [ SEEK ]   TMEM121B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM121B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27439
GTEX Portal (Tissue expression)TMEM121B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXQ6
Splice isoforms : SwissVarQ9BXQ6
PhosPhoSitePlusQ9BXQ6
Domains : Interpro (EBI)CECR6    CECR6/TMEM121   
Domain families : Pfam (Sanger)CECR6_TMEM121 (PF14997)   
Domain families : Pfam (NCBI)pfam14997   
Conserved Domain (NCBI)TMEM121B
DMDM Disease mutations27439
Blocks (Seattle)TMEM121B
SuperfamilyQ9BXQ6
Human Protein AtlasENSG00000183307
Peptide AtlasQ9BXQ6
IPIIPI00010832   IPI00853127   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXQ6
IntAct (EBI)Q9BXQ6
FunCoupENSG00000183307
BioGRIDTMEM121B
STRING (EMBL)TMEM121B
ZODIACTMEM121B
Ontologies - Pathways
QuickGOQ9BXQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTMEM121B
Atlas of Cancer Signalling NetworkTMEM121B
Wikipedia pathwaysTMEM121B
Orthology - Evolution
OrthoDB27439
GeneTree (enSembl)ENSG00000183307
Phylogenetic Trees/Animal Genes : TreeFamTMEM121B
HOVERGENQ9BXQ6
HOGENOMQ9BXQ6
Homologs : HomoloGeneTMEM121B
Homology/Alignments : Family Browser (UCSC)TMEM121B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM121B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM121B
dbVarTMEM121B
ClinVarTMEM121B
1000_GenomesTMEM121B 
Exome Variant ServerTMEM121B
ExAC (Exome Aggregation Consortium)TMEM121B (select the gene name)
Genetic variants : HAPMAP27439
Genomic Variants (DGV)TMEM121B [DGVbeta]
DECIPHERTMEM121B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM121B 
Mutations
ICGC Data PortalTMEM121B 
TCGA Data PortalTMEM121B 
Broad Tumor PortalTMEM121B
OASIS Portal<TD>TMEM121B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTMEM121B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM121B
DgiDB (Drug Gene Interaction Database)TMEM121B
DoCM (Curated mutations)TMEM121B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM121B (select a term)
intoGenTMEM121B
Cancer3DTMEM121B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM121B
Genetic Testing Registry TMEM121B
NextProtQ9BXQ6 [Medical]
TSGene27439
GENETestsTMEM121B
Target ValidationTMEM121B
Huge Navigator TMEM121B [HugePedia]
snp3D : Map Gene to Disease27439
BioCentury BCIQTMEM121B
ClinGenTMEM121B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27439
Chemical/Pharm GKB GenePA26387
Clinical trialTMEM121B
Miscellaneous
canSAR (ICR)TMEM121B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM121B
EVEXTMEM121B
GoPubMedTMEM121B
iHOPTMEM121B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:38 CEST 2017

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