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TMEM125 (transmembrane protein 125)

Identity

Alias_symbol (synonym)MGC17299
Other alias-
HGNC (Hugo) TMEM125
LocusID (NCBI) 128218
Atlas_Id 74786
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43735665 and ends at 43739673 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM125 (1p34.2) / TMEM125 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM125   28275
Cards
Entrez_Gene (NCBI)TMEM125  128218  transmembrane protein 125
Aliases
GeneCards (Weizmann)TMEM125
Ensembl hg19 (Hinxton)ENSG00000179178 [Gene_View]  chr1:43735665-43739673 [Contig_View]  TMEM125 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179178 [Gene_View]  chr1:43735665-43739673 [Contig_View]  TMEM125 [Vega]
ICGC DataPortalENSG00000179178
TCGA cBioPortalTMEM125
AceView (NCBI)TMEM125
Genatlas (Paris)TMEM125
WikiGenes128218
SOURCE (Princeton)TMEM125
Genetics Home Reference (NIH)TMEM125
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM125  -     chr1:43735665-43739673 +  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM125  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM125 - 1p34.2 [CytoView hg19]  TMEM125 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBITMEM125 [Mapview hg19]  TMEM125 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC016858 BC072393 BI768096 BI821566 BM677938
RefSeq transcript (Entrez)NM_144626
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TMEM125
Cluster EST : UnigeneHs.104476 [ NCBI ]
CGAP (NCI)Hs.104476
Alternative Splicing GalleryENSG00000179178
Gene ExpressionTMEM125 [ NCBI-GEO ]   TMEM125 [ EBI - ARRAY_EXPRESS ]   TMEM125 [ SEEK ]   TMEM125 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM125 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128218
GTEX Portal (Tissue expression)TMEM125
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AQ2
Splice isoforms : SwissVarQ96AQ2
PhosPhoSitePlusQ96AQ2
Domains : Interpro (EBI)TMEM125   
Domain families : Pfam (Sanger)TMEM125 (PF15109)   
Domain families : Pfam (NCBI)pfam15109   
Conserved Domain (NCBI)TMEM125
DMDM Disease mutations128218
Blocks (Seattle)TMEM125
SuperfamilyQ96AQ2
Human Protein AtlasENSG00000179178
Peptide AtlasQ96AQ2
HPRD14457
IPIIPI00059631   IPI00985003   
Protein Interaction databases
DIP (DOE-UCLA)Q96AQ2
IntAct (EBI)Q96AQ2
FunCoupENSG00000179178
BioGRIDTMEM125
STRING (EMBL)TMEM125
ZODIACTMEM125
Ontologies - Pathways
QuickGOQ96AQ2
Ontology : AmiGOmolecular_function  cellular_component  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  integral component of membrane  
NDEx NetworkTMEM125
Atlas of Cancer Signalling NetworkTMEM125
Wikipedia pathwaysTMEM125
Orthology - Evolution
OrthoDB128218
GeneTree (enSembl)ENSG00000179178
Phylogenetic Trees/Animal Genes : TreeFamTMEM125
HOVERGENQ96AQ2
HOGENOMQ96AQ2
Homologs : HomoloGeneTMEM125
Homology/Alignments : Family Browser (UCSC)TMEM125
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM125 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM125
dbVarTMEM125
ClinVarTMEM125
1000_GenomesTMEM125 
Exome Variant ServerTMEM125
ExAC (Exome Aggregation Consortium)TMEM125 (select the gene name)
Genetic variants : HAPMAP128218
Genomic Variants (DGV)TMEM125 [DGVbeta]
DECIPHER (Syndromes)1:43735665-43739673  ENSG00000179178
CONAN: Copy Number AnalysisTMEM125 
Mutations
ICGC Data PortalTMEM125 
TCGA Data PortalTMEM125 
Broad Tumor PortalTMEM125
OASIS PortalTMEM125 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM125  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM125
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM125
DgiDB (Drug Gene Interaction Database)TMEM125
DoCM (Curated mutations)TMEM125 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM125 (select a term)
intoGenTMEM125
Cancer3DTMEM125(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM125
Genetic Testing Registry TMEM125
NextProtQ96AQ2 [Medical]
TSGene128218
GENETestsTMEM125
Huge Navigator TMEM125 [HugePedia]
snp3D : Map Gene to Disease128218
BioCentury BCIQTMEM125
ClinGenTMEM125
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128218
Chemical/Pharm GKB GenePA143485644
Clinical trialTMEM125
Miscellaneous
canSAR (ICR)TMEM125 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM125
EVEXTMEM125
GoPubMedTMEM125
iHOPTMEM125
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:48:24 CET 2017

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