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TMEM127 (transmembrane protein 127)

Identity

Other names-
HGNC (Hugo) TMEM127
LocusID (NCBI) 55654
Atlas_Id 51455
Location 2q11.2
Location_base_pair Starts at 96915946 and ends at 96931751 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TMEM127   26038
Cards
Entrez_Gene (NCBI)TMEM127  55654  transmembrane protein 127
GeneCards (Weizmann)TMEM127
Ensembl hg19 (Hinxton) [Gene_View]  chr2:96915946-96931751 [Contig_View]  TMEM127 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:96915946-96931751 [Contig_View]  TMEM127 [Vega]
TCGA cBioPortalTMEM127
AceView (NCBI)TMEM127
Genatlas (Paris)TMEM127
WikiGenes55654
SOURCE (Princeton)TMEM127
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM127  -     chr2:96915946-96931751 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM127  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM127 - 2q11.2 [CytoView hg19]  TMEM127 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM127 [Mapview hg19]  TMEM127 [Mapview hg38]
OMIM171300   613403   
Gene and transcription
Genbank (Entrez)AK000514 AK025910 AK293276 AL117494 AL117581
RefSeq transcript (Entrez)NM_001193304 NM_017849 NM_032218
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_027695 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)TMEM127
Cluster EST : UnigeneHs.735706 [ NCBI ]
CGAP (NCI)Hs.735706
Alternative Splicing : Fast-db (Paris)GSHG0017825
Gene ExpressionTMEM127 [ NCBI-GEO ]     TMEM127 [ SEEK ]   TMEM127 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75204 (Uniprot)
NextProtO75204  [Medical]  [Publications]
With graphics : InterProO75204
Splice isoforms : SwissVarO75204 (Swissvar)
Related proteins : CluSTrO75204
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations55654
Blocks (Seattle)O75204
Peptide AtlasO75204
HPRD07917
IPIIPI00016455   IPI00386215   IPI00927741   
Protein Interaction databases
DIP (DOE-UCLA)O75204
IntAct (EBI)O75204
BioGRIDTMEM127
IntegromeDBTMEM127
STRING (EMBL)TMEM127
Ontologies - Pathways
QuickGOO75204
Ontology : AmiGOmolecular_function  cytoplasm  early endosome  plasma membrane  endosome organization  negative regulation of cell proliferation  integral component of membrane  Rab GTPase binding  negative regulation of TOR signaling  
Ontology : EGO-EBImolecular_function  cytoplasm  early endosome  plasma membrane  endosome organization  negative regulation of cell proliferation  integral component of membrane  Rab GTPase binding  negative regulation of TOR signaling  
Protein Interaction DatabaseTMEM127
DoCM (Curated mutations)TMEM127
Wikipedia pathwaysTMEM127
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerTMEM127 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM127
dbVarTMEM127
ClinVarTMEM127
1000_GenomesTMEM127 
Exome Variant ServerTMEM127
SNP (GeneSNP Utah)TMEM127
SNP : HGBaseTMEM127
Genetic variants : HAPMAPTMEM127
Genomic Variants (DGV)TMEM127 [DGVbeta]
Mutations
ICGC Data PortalTMEM127 
TCGA Data PortalTMEM127 
Tumor PortalTMEM127
Somatic Mutations in Cancer : COSMICTMEM127 
LOVD (Leiden Open Variation Database)genes/TMEM127
LOVD (Leiden Open Variation Database)genes/TMEM127
LOVD (Leiden Open Variation Database)genes/TMEM127
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:96915946-96931751
CONAN: Copy Number AnalysisTMEM127 
Mutations and Diseases : HGMDTMEM127
OMIM171300    613403   
MedgenTMEM127
NextProtO75204 [Medical]
GENETestsTMEM127
Disease Genetic AssociationTMEM127
Huge Navigator TMEM127 [HugePedia]  TMEM127 [HugeCancerGEM]
snp3D : Map Gene to Disease55654
DGIdb (Drug Gene Interaction db)TMEM127
BioCentury BCIQTMEM127
General knowledge
Homologs : HomoloGeneTMEM127
Homology/Alignments : Family Browser (UCSC)TMEM127
Phylogenetic Trees/Animal Genes : TreeFamTMEM127
Chemical/Protein Interactions : CTD55654
Chemical/Pharm GKB GenePA143485647
Clinical trialTMEM127
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
CoreMineTMEM127
GoPubMedTMEM127
iHOPTMEM127
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 29 19:27:49 CEST 2015

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