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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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TMEM127 (transmembrane protein 127)

Identity

Other names-
HGNC (Hugo) TMEM127
LocusID (NCBI) 55654
Location 2q11.2
Location_base_pair Starts at 96915946 and ends at 96931751 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TMEM127   26038
Cards
Entrez_Gene (NCBI)TMEM127  55654  transmembrane protein 127
GeneCards (Weizmann)TMEM127
Ensembl hg19 (Hinxton) [Gene_View]  chr2:96915946-96931751 [Contig_View]  TMEM127 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:96915946-96931751 [Contig_View]  TMEM127 [Vega]
cBioPortalTMEM127
AceView (NCBI)TMEM127
Genatlas (Paris)TMEM127
WikiGenes55654
SOURCE (Princeton)TMEM127
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM127  -     chr2:96915946-96931751 -  2q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM127  -     2q11.2   [Description]    (hg38-Dec_2013)
EnsemblTMEM127 - 2q11.2 [CytoView hg19]  TMEM127 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM127 [Mapview hg19]  TMEM127 [Mapview hg38]
OMIM171300   613403   
Gene and transcription
Genbank (Entrez)AK000514 AK025910 AK293276 AL117494 AL117581
RefSeq transcript (Entrez)NM_001193304 NM_017849 NM_032218
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_027695 NT_005403 NW_001838810 NW_004929303
Consensus coding sequences : CCDS (NCBI)TMEM127
Cluster EST : UnigeneHs.735706 [ NCBI ]
CGAP (NCI)Hs.735706
Alternative Splicing : Fast-db (Paris)GSHG0017825
Gene ExpressionTMEM127 [ NCBI-GEO ]     TMEM127 [ SEEK ]   TMEM127 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75204 (Uniprot)
NextProtO75204  [Medical]
With graphics : InterProO75204
Splice isoforms : SwissVarO75204 (Swissvar)
Related proteins : CluSTrO75204
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations55654
Blocks (Seattle)O75204
Peptide AtlasO75204
HPRD07917
IPIIPI00016455   IPI00386215   IPI00927741   
Protein Interaction databases
DIP (DOE-UCLA)O75204
IntAct (EBI)O75204
BioGRIDTMEM127
IntegromeDBTMEM127
STRING (EMBL)TMEM127
Ontologies - Pathways
QuickGOO75204
Ontology : AmiGOmolecular_function  cytoplasm  plasma membrane  negative regulation of cell proliferation  integral component of membrane  negative regulation of TOR signaling  
Ontology : EGO-EBImolecular_function  cytoplasm  plasma membrane  negative regulation of cell proliferation  integral component of membrane  negative regulation of TOR signaling  
Protein Interaction DatabaseTMEM127
DoCM (Curated mutations)TMEM127
Wikipedia pathwaysTMEM127
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTMEM127 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM127
dbVarTMEM127
ClinVarTMEM127
1000_GenomesTMEM127 
Exome Variant ServerTMEM127
SNP (GeneSNP Utah)TMEM127
SNP : HGBaseTMEM127
Genetic variants : HAPMAPTMEM127
Genomic Variants (DGV)TMEM127 [DGVbeta]
Mutations
Somatic Mutations in Cancer : COSMICTMEM127 
CONAN: Copy Number AnalysisTMEM127 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:96915946-96931751
Mutations and Diseases : HGMDTMEM127
OMIM171300    613403   
MedgenTMEM127
NextProtO75204 [Medical]
GENETestsTMEM127
Disease Genetic AssociationTMEM127
Huge Navigator TMEM127 [HugePedia]  TMEM127 [HugeCancerGEM]
snp3D : Map Gene to Disease55654
DGIdb (Drug Gene Interaction db)TMEM127
General knowledge
Homologs : HomoloGeneTMEM127
Homology/Alignments : Family Browser (UCSC)TMEM127
Phylogenetic Trees/Animal Genes : TreeFamTMEM127
Chemical/Protein Interactions : CTD55654
Chemical/Pharm GKB GenePA143485647
Clinical trialTMEM127
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineTMEM127
GoPubMedTMEM127
iHOPTMEM127
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 19:03:15 CET 2015
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