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TMEM130 (transmembrane protein 130)

Identity

Alias_symbol (synonym)DKFZp761L1417
FLJ42643
Other alias-
HGNC (Hugo) TMEM130
LocusID (NCBI) 222865
Atlas_Id 74791
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 98846488 and ends at 98870050 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC440028 (11p15.4) / TMEM130 (7q22.1)TMEM130 (7q22.1) / KPNA7 (7q22.1)ZDHHC8P1 () / TMEM130 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM130   25429
Cards
Entrez_Gene (NCBI)TMEM130  222865  transmembrane protein 130
Aliases
GeneCards (Weizmann)TMEM130
Ensembl hg19 (Hinxton)ENSG00000166448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166448 [Gene_View]  chr7:98846488-98870050 [Contig_View]  TMEM130 [Vega]
ICGC DataPortalENSG00000166448
TCGA cBioPortalTMEM130
AceView (NCBI)TMEM130
Genatlas (Paris)TMEM130
WikiGenes222865
SOURCE (Princeton)TMEM130
Genetics Home Reference (NIH)TMEM130
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM130  -     chr7:98846488-98870050 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM130  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM130 - 7q22.1 [CytoView hg19]  TMEM130 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBITMEM130 [Mapview hg19]  TMEM130 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB072903 AK124634 AK225783 AK294658 AK295543
RefSeq transcript (Entrez)NM_001134450 NM_001134451 NM_152913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM130
Cluster EST : UnigeneHs.270753 [ NCBI ]
CGAP (NCI)Hs.270753
Alternative Splicing GalleryENSG00000166448
Gene ExpressionTMEM130 [ NCBI-GEO ]   TMEM130 [ EBI - ARRAY_EXPRESS ]   TMEM130 [ SEEK ]   TMEM130 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM130 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]&nbwp [cancer]  [perturbations]  
BioGPS (Tissue expression)222865
GTEX Portal (Tissue expression)TMEM130
Human Protein AtlasENSG00000166448-TMEM130 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3G9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3G9
Splice isoforms : SwissVarQ8N3G9
PhosPhoSitePlusQ8N3G9
Domaine pattern : Prosite (Expaxy)PKD (PS50093)   
Domains : Interpro (EBI)PKD_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM130
DMDM Disease mutations222865
Blocks (Seattle)TMEM130
SuperfamilyQ8N3G9
Human Protein Atlas [tissue]ENSG00000166448-TMEM130 [tissue]
Peptide AtlasQ8N3G9
HPRD13226
IPIIPI00828167   IPI00550301   IPI00217642   IPI01012228   IPI00925301   IPI00926416   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3G9
IntAct (EBI)Q8N3G9
FunCoupENSG00000166448
BioGRIDTMEM130
STRING (EMBL)TMEM130
ZODIACTMEM130
Ontologies - Pathways
QuickGOQ8N3G9
Ontology : AmiGOGolgi membrane  Golgi apparatus  integral component of plasma membrane  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  integral component of plasma membrane  
NDEx NetworkTMEM130
Atlas of Cancer Signalling NetworkTMEM130
Wikipedia pathwaysTMEM130
Orthology - Evolution
OrthoDB222865
GeneTree (enSembl)ENSG00000166448
Phylogenetic Trees/Animal Genes : TreeFamTMEM130
HOVERGENQ8N3G9
HOGENOMQ8N3G9
Homologs : HomoloGeneTMEM130
Homology/Alignments : Family Browser (UCSC)TMEM130
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM130
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM130 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM130
dbVarTMEM130
ClinVarTMEM130
1000_GenomesTMEM130 
Exome Variant ServerTMEM130
ExAC (Exome Aggregation Consortium)ENSG00000166448
GNOMAD BrowserENSG00000166448
Genetic variants : HAPMAP222865
Genomic Variants (DGV)TMEM130 [DGVbeta]
DECIPHERTMEM130 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM130 
Mutations
ICGC Data PortalTMEM130 
TCGA Data PortalTMEM130 
Broad Tumor PortalTMEM130
OASIS PortalTMEM130 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM130  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM130
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM130
DgiDB (Drug Gene Interaction Database)TMEM130
DoCM (Curated mutations)TMEM130 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM130 (select a term)
intoGenTMEM130
Cancer3DTMEM130(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM130
MedgenTMEM130
Genetic Testing Registry TMEM130
NextProtQ8N3G9 [Medical]
TSGene222865
GENETestsTMEM130
Target ValidationTMEM130
Huge Navigator TMEM130 [HugePedia]
snp3D : Map Gene to Disease222865
BioCentury BCIQTMEM130
ClinGenTMEM130
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222865
Chemical/Pharm GKB GenePA143485650
Clinical trialTMEM130
Miscellaneous
canSAR (ICR)TMEM130 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM130
EVEXTMEM130
GoPubMedTMEM130
iHOPTMEM130
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:18:23 CET 2017

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