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TMEM135 (transmembrane protein 135)

Identity

Alias_symbol (synonym)FLJ22104
Other aliasPMP52
HGNC (Hugo) TMEM135
LocusID (NCBI) 65084
Atlas_Id 74799
Location 11q14.2  [Link to chromosome band 11q14]
Location_base_pair Starts at 87037844 and ends at 87328834 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CKAP5 (11p11.2) / TMEM135 (11q14.2)SYTL2 (11q14.1) / TMEM135 (11q14.2)TMEM135 (11q14.2) / AAMDC (11q14.1)
TMEM135 (11q14.2) / ALDH3B2 (11q13.2)TMEM135 (11q14.2) / CCDC81 (11q14.2)TMEM135 (11q14.2) / CHEK1 (11q24.2)
TMEM135 (11q14.2) / CLMP (11q24.1)TMEM135 (11q14.2) / GPD1L (3p22.3)TMEM135 (11q14.2) / TMEM135 (11q14.2)
TMEM135 C11orf67TMEM135 CLMPTMEM135 ALDH3B2
TMEM135 CHEK1TMEM135 GPD1LSYTL2 TMEM135
CKAP5 TMEM135

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM135   26167
Cards
Entrez_Gene (NCBI)TMEM135  65084  transmembrane protein 135
AliasesPMP52
GeneCards (Weizmann)TMEM135
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:87037844-87328834 [Contig_View]  TMEM135 [Vega]
TCGA cBioPortalTMEM135
AceView (NCBI)TMEM135
Genatlas (Paris)TMEM135
WikiGenes65084
SOURCE (Princeton)TMEM135
Genetics Home Reference (NIH)TMEM135
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM135  -     chr11:87037844-87328834 +  11q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM135  -     11q14.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM135 - 11q14.2 [CytoView hg19]  TMEM135 - 11q14.2 [CytoView hg38]
Mapping of homologs : NCBITMEM135 [Mapview hg19]  TMEM135 [Mapview hg38]
OMIM616360   
Gene and transcription
Genbank (Entrez)AF080569 AK000684 AK024853 AK025757 AK225364
RefSeq transcript (Entrez)NM_001168724 NM_022918
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM135
Cluster EST : UnigeneHs.490745 [ NCBI ]
CGAP (NCI)Hs.490745
Gene ExpressionTMEM135 [ NCBI-GEO ]   TMEM135 [ EBI - ARRAY_EXPRESS ]   TMEM135 [ SEEK ]   TMEM135 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM135 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65084
GTEX Portal (Tissue expression)TMEM135
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UB9
Splice isoforms : SwissVarQ86UB9
PhosPhoSitePlusQ86UB9
Domains : Interpro (EBI)Tim17/Tim22/Tim23/PMP24    Tmem135    TMEM135_N   
Domain families : Pfam (Sanger)Tim17 (PF02466)    TMEM135_C_rich (PF15982)   
Domain families : Pfam (NCBI)pfam02466    pfam15982   
Conserved Domain (NCBI)TMEM135
DMDM Disease mutations65084
Blocks (Seattle)TMEM135
SuperfamilyQ86UB9
Peptide AtlasQ86UB9
HPRD07978
IPIIPI00384207   IPI00465106   IPI00976130   IPI00977426   IPI01012146   IPI00975465   
Protein Interaction databases
DIP (DOE-UCLA)Q86UB9
IntAct (EBI)Q86UB9
BioGRIDTMEM135
STRING (EMBL)TMEM135
ZODIACTMEM135
Ontologies - Pathways
QuickGOQ86UB9
Ontology : AmiGOperoxisome  peroxisome  peroxisomal membrane  lipid particle  peroxisome organization  response to cold  integral component of membrane  mitochondrial membrane  response to food  regulation of mitochondrial fission  
Ontology : EGO-EBIperoxisome  peroxisome  peroxisomal membrane  lipid particle  peroxisome organization  response to cold  integral component of membrane  mitochondrial membrane  response to food  regulation of mitochondrial fission  
NDEx NetworkTMEM135
Atlas of Cancer Signalling NetworkTMEM135
Wikipedia pathwaysTMEM135
Orthology - Evolution
OrthoDB65084
Phylogenetic Trees/Animal Genes : TreeFamTMEM135
HOVERGENQ86UB9
HOGENOMQ86UB9
Homologs : HomoloGeneTMEM135
Homology/Alignments : Family Browser (UCSC)TMEM135
Gene fusions - Rearrangements
Fusion: TCGATMEM135 C11orf67
Fusion: TCGATMEM135 CLMP
Fusion: TCGATMEM135 ALDH3B2
Fusion: TCGATMEM135 CHEK1
Fusion: TCGATMEM135 GPD1L
Fusion: TCGASYTL2 TMEM135
Fusion: TCGACKAP5 TMEM135
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM135 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM135
dbVarTMEM135
ClinVarTMEM135
1000_GenomesTMEM135 
Exome Variant ServerTMEM135
ExAC (Exome Aggregation Consortium)TMEM135 (select the gene name)
Genetic variants : HAPMAP65084
Genomic Variants (DGV)TMEM135 [DGVbeta]
DECIPHERTMEM135 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM135 
Mutations
ICGC Data PortalTMEM135 
TCGA Data PortalTMEM135 
Broad Tumor PortalTMEM135
OASIS PortalTMEM135 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM135  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM135
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM135
DgiDB (Drug Gene Interaction Database)TMEM135
DoCM (Curated mutations)TMEM135 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM135 (select a term)
intoGenTMEM135
Cancer3DTMEM135(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616360   
Orphanet
MedgenTMEM135
Genetic Testing Registry TMEM135
NextProtQ86UB9 [Medical]
TSGene65084
GENETestsTMEM135
Huge Navigator TMEM135 [HugePedia]
snp3D : Map Gene to Disease65084
BioCentury BCIQTMEM135
ClinGenTMEM135
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65084
Chemical/Pharm GKB GenePA143485658
Clinical trialTMEM135
Miscellaneous
canSAR (ICR)TMEM135 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM135
EVEXTMEM135
GoPubMedTMEM135
iHOPTMEM135
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:58:22 CEST 2017

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