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TMEM138 (transmembrane protein 138)

Identity

Alias (NCBI)HSPC196
HGNC (Hugo) TMEM138
HGNC Alias symbHSPC196
JBTS16
LocusID (NCBI) 51524
Atlas_Id 74801
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61362374 and ends at 61369508 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM138 (11q12.2) / CBX5 (12q13.13)TMEM138 (11q12.2) / DTNB (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM138   26944
Cards
Entrez_Gene (NCBI)TMEM138    transmembrane protein 138
AliasesHSPC196
GeneCards (Weizmann)TMEM138
Ensembl hg19 (Hinxton)ENSG00000149483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149483 [Gene_View]  ENSG00000149483 [Sequence]  chr11:61362374-61369508 [Contig_View]  TMEM138 [Vega]
ICGC DataPortalENSG00000149483
TCGA cBioPortalTMEM138
AceView (NCBI)TMEM138
Genatlas (Paris)TMEM138
SOURCE (Princeton)TMEM138
Genetics Home Reference (NIH)TMEM138
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM138  -     chr11:61362374-61369508 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM138  -     11q12.2   [Description]    (hg19-Feb_2009)
GoldenPathTMEM138 - 11q12.2 [CytoView hg19]  TMEM138 - 11q12.2 [CytoView hg38]
ImmunoBaseENSG00000149483
Genome Data Viewer NCBITMEM138 [Mapview hg19]  
OMIM614459   614465   
Gene and transcription
Genbank (Entrez)AF151030 AF151032 AI097052 AI768672 AK027724
RefSeq transcript (Entrez)NM_001330281 NM_016464
Consensus coding sequences : CCDS (NCBI)TMEM138
Gene ExpressionTMEM138 [ NCBI-GEO ]   TMEM138 [ EBI - ARRAY_EXPRESS ]   TMEM138 [ SEEK ]   TMEM138 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM138 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM138 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51524
GTEX Portal (Tissue expression)TMEM138
Human Protein AtlasENSG00000149483-TMEM138 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPI0
PhosPhoSitePlusQ9NPI0
Domains : Interpro (EBI)TM_138   
Domain families : Pfam (Sanger)TMEM138 (PF14935)   
Domain families : Pfam (NCBI)pfam14935   
Conserved Domain (NCBI)TMEM138
SuperfamilyQ9NPI0
AlphaFold pdb e-kbQ9NPI0   
Human Protein Atlas [tissue]ENSG00000149483-TMEM138 [tissue]
HPRD13713
Protein Interaction databases
DIP (DOE-UCLA)Q9NPI0
IntAct (EBI)Q9NPI0
BioGRIDTMEM138
STRING (EMBL)TMEM138
ZODIACTMEM138
Ontologies - Pathways
QuickGOQ9NPI0
Ontology : AmiGOvacuolar membrane  cilium  cilium  integral component of membrane  cilium assembly  
Ontology : EGO-EBIvacuolar membrane  cilium  cilium  integral component of membrane  cilium assembly  
NDEx NetworkTMEM138
Atlas of Cancer Signalling NetworkTMEM138
Wikipedia pathwaysTMEM138
Orthology - Evolution
OrthoDB51524
GeneTree (enSembl)ENSG00000149483
Phylogenetic Trees/Animal Genes : TreeFamTMEM138
Homologs : HomoloGeneTMEM138
Homology/Alignments : Family Browser (UCSC)TMEM138
Gene fusions - Rearrangements
Fusion : QuiverTMEM138
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM138 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM138
dbVarTMEM138
ClinVarTMEM138
MonarchTMEM138
1000_GenomesTMEM138 
Exome Variant ServerTMEM138
GNOMAD BrowserENSG00000149483
Varsome BrowserTMEM138
ACMGTMEM138 variants
VarityQ9NPI0
Genomic Variants (DGV)TMEM138 [DGVbeta]
DECIPHERTMEM138 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM138 
Mutations
ICGC Data PortalTMEM138 
TCGA Data PortalTMEM138 
Broad Tumor PortalTMEM138
OASIS PortalTMEM138 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM138  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM138
Mutations and Diseases : HGMDTMEM138
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM138
DgiDB (Drug Gene Interaction Database)TMEM138
DoCM (Curated mutations)TMEM138
CIViC (Clinical Interpretations of Variants in Cancer)TMEM138
Cancer3DTMEM138
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614459    614465   
Orphanet519   
DisGeNETTMEM138
MedgenTMEM138
Genetic Testing Registry TMEM138
NextProtQ9NPI0 [Medical]
GENETestsTMEM138
Target ValidationTMEM138
Huge Navigator TMEM138 [HugePedia]
ClinGenTMEM138
Clinical trials, drugs, therapy
MyCancerGenomeTMEM138
Protein Interactions : CTDTMEM138
Pharm GKB GenePA144596259
PharosQ9NPI0
Clinical trialTMEM138
Miscellaneous
canSAR (ICR)TMEM138
HarmonizomeTMEM138
DataMed IndexTMEM138
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:49 CEST 2021

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