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TMEM138 (transmembrane protein 138)

Identity

Alias_symbol (synonym)HSPC196
JBTS16
Other alias
HGNC (Hugo) TMEM138
LocusID (NCBI) 51524
Atlas_Id 74801
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 61362001 and ends at 61369503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM138 (11q12.2) / CBX5 (12q13.13)TMEM138 (11q12.2) / DTNB (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM138   26944
Cards
Entrez_Gene (NCBI)TMEM138  51524  transmembrane protein 138
AliasesHSPC196
GeneCards (Weizmann)TMEM138
Ensembl hg19 (Hinxton)ENSG00000149483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149483 [Gene_View]  chr11:61362001-61369503 [Contig_View]  TMEM138 [Vega]
ICGC DataPortalENSG00000149483
TCGA cBioPortalTMEM138
AceView (NCBI)TMEM138
Genatlas (Paris)TMEM138
WikiGenes51524
SOURCE (Princeton)TMEM138
Genetics Home Reference (NIH)TMEM138
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM138  -     chr11:61362001-61369503 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM138  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM138 - 11q12.2 [CytoView hg19]  TMEM138 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBITMEM138 [Mapview hg19]  TMEM138 [Mapview hg38]
OMIM614459   614465   
Gene and transcription
Genbank (Entrez)AF151030 AF151032 AI097052 AI768672 AK027724
RefSeq transcript (Entrez)NM_001330281 NM_016464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM138
Cluster EST : UnigeneHs.406530 [ NCBI ]
CGAP (NCI)Hs.406530
Alternative Splicing GalleryENSG00000149483
Gene ExpressionTMEM138 [ NCBI-GEO ]   TMEM138 [ EBI - ARRAY_EXPRESS ]   TMEM138 [ SEEK ]   TMEM138 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM138 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51524
GTEX Portal (Tissue expression)TMEM138
Human Protein AtlasENSG00000149483-TMEM138 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPI0
Splice isoforms : SwissVarQ9NPI0
PhosPhoSitePlusQ9NPI0
Domains : Interpro (EBI)TM_138   
Domain families : Pfam (Sanger)TMEM138 (PF14935)   
Domain families : Pfam (NCBI)pfam14935   
Conserved Domain (NCBI)TMEM138
DMDM Disease mutations51524
Blocks (Seattle)TMEM138
SuperfamilyQ9NPI0
Human Protein Atlas [tissue]ENSG00000149483-TMEM138 [tissue]
Peptide AtlasQ9NPI0
HPRD13713
IPIIPI00009350   IPI01017976   IPI00910713   IPI01013202   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPI0
IntAct (EBI)Q9NPI0
FunCoupENSG00000149483
BioGRIDTMEM138
STRING (EMBL)TMEM138
ZODIACTMEM138
Ontologies - Pathways
QuickGOQ9NPI0
Ontology : AmiGOvacuolar membrane  cilium  integral component of membrane  cilium assembly  
Ontology : EGO-EBIvacuolar membrane  cilium  integral component of membrane  cilium assembly  
NDEx NetworkTMEM138
Atlas of Cancer Signalling NetworkTMEM138
Wikipedia pathwaysTMEM138
Orthology - Evolution
OrthoDB51524
GeneTree (enSembl)ENSG00000149483
Phylogenetic Trees/Animal Genes : TreeFamTMEM138
HOVERGENQ9NPI0
HOGENOMQ9NPI0
Homologs : HomoloGeneTMEM138
Homology/Alignments : Family Browser (UCSC)TMEM138
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM138
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM138 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM138
dbVarTMEM138
ClinVarTMEM138
1000_GenomesTMEM138 
Exome Variant ServerTMEM138
ExAC (Exome Aggregation Consortium)ENSG00000149483
GNOMAD BrowserENSG00000149483
Genetic variants : HAPMAP51524
Genomic Variants (DGV)TMEM138 [DGVbeta]
DECIPHERTMEM138 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM138 
Mutations
ICGC Data PortalTMEM138 
TCGA Data PortalTMEM138 
Broad Tumor PortalTMEM138
OASIS PortalTMEM138 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM138  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM138
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM138
DgiDB (Drug Gene Interaction Database)TMEM138
DoCM (Curated mutations)TMEM138 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM138 (select a term)
intoGenTMEM138
Cancer3DTMEM138(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614459    614465   
Orphanet519   
DisGeNETTMEM138
MedgenTMEM138
Genetic Testing Registry TMEM138
NextProtQ9NPI0 [Medical]
TSGene51524
GENETestsTMEM138
Target ValidationTMEM138
Huge Navigator TMEM138 [HugePedia]
snp3D : Map Gene to Disease51524
BioCentury BCIQTMEM138
ClinGenTMEM138
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51524
Chemical/Pharm GKB GenePA144596259
Clinical trialTMEM138
Miscellaneous
canSAR (ICR)TMEM138 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM138
EVEXTMEM138
GoPubMedTMEM138
iHOPTMEM138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:26 CET 2017

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