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TMEM139 (transmembrane protein 139)

Identity

Alias_symbol (synonym)FLJ90586
Other alias-
HGNC (Hugo) TMEM139
LocusID (NCBI) 135932
Atlas_Id 74802
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142981992 and ends at 142985142 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM139   22058
Cards
Entrez_Gene (NCBI)TMEM139  135932  transmembrane protein 139
Aliases
GeneCards (Weizmann)TMEM139
Ensembl hg19 (Hinxton)ENSG00000178826 [Gene_View]  chr7:142981992-142985142 [Contig_View]  TMEM139 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178826 [Gene_View]  chr7:142981992-142985142 [Contig_View]  TMEM139 [Vega]
ICGC DataPortalENSG00000178826
TCGA cBioPortalTMEM139
AceView (NCBI)TMEM139
Genatlas (Paris)TMEM139
WikiGenes135932
SOURCE (Princeton)TMEM139
Genetics Home Reference (NIH)TMEM139
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM139  -     chr7:142981992-142985142 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM139  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblTMEM139 - 7q34 [CytoView hg19]  TMEM139 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITMEM139 [Mapview hg19]  TMEM139 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027352 AK075067 AK172816 AK315170 AY358781
RefSeq transcript (Entrez)NM_001242773 NM_001242774 NM_001242775 NM_001282876 NM_001282877 NM_153345
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_029248 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)TMEM139
Cluster EST : UnigeneHs.731832 [ NCBI ]
CGAP (NCI)Hs.731832
Alternative Splicing GalleryENSG00000178826
Gene ExpressionTMEM139 [ NCBI-GEO ]   TMEM139 [ EBI - ARRAY_EXPRESS ]   TMEM139 [ SEEK ]   TMEM139 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM139 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135932
GTEX Portal (Tissue expression)TMEM139
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV31
Splice isoforms : SwissVarQ8IV31
PhosPhoSitePlusQ8IV31
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM139
DMDM Disease mutations135932
Blocks (Seattle)TMEM139
SuperfamilyQ8IV31
Human Protein AtlasENSG00000178826
Peptide AtlasQ8IV31
HPRD08298
IPIIPI00410502   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV31
IntAct (EBI)Q8IV31
FunCoupENSG00000178826
BioGRIDTMEM139
STRING (EMBL)TMEM139
ZODIACTMEM139
Ontologies - Pathways
QuickGOQ8IV31
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM139
Atlas of Cancer Signalling NetworkTMEM139
Wikipedia pathwaysTMEM139
Orthology - Evolution
OrthoDB135932
GeneTree (enSembl)ENSG00000178826
Phylogenetic Trees/Animal Genes : TreeFamTMEM139
HOVERGENQ8IV31
HOGENOMQ8IV31
Homologs : HomoloGeneTMEM139
Homology/Alignments : Family Browser (UCSC)TMEM139
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM139 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM139
dbVarTMEM139
ClinVarTMEM139
1000_GenomesTMEM139 
Exome Variant ServerTMEM139
ExAC (Exome Aggregation Consortium)TMEM139 (select the gene name)
Genetic variants : HAPMAP135932
Genomic Variants (DGV)TMEM139 [DGVbeta]
DECIPHER (Syndromes)7:142981992-142985142  ENSG00000178826
CONAN: Copy Number AnalysisTMEM139 
Mutations
ICGC Data PortalTMEM139 
TCGA Data PortalTMEM139 
Broad Tumor PortalTMEM139
OASIS PortalTMEM139 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM139  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM139
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM139
DgiDB (Drug Gene Interaction Database)TMEM139
DoCM (Curated mutations)TMEM139 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM139 (select a term)
intoGenTMEM139
Cancer3DTMEM139(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM139
Genetic Testing Registry TMEM139
NextProtQ8IV31 [Medical]
TSGene135932
GENETestsTMEM139
Huge Navigator TMEM139 [HugePedia]
snp3D : Map Gene to Disease135932
BioCentury BCIQTMEM139
ClinGenTMEM139
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135932
Chemical/Pharm GKB GenePA144596260
Clinical trialTMEM139
Miscellaneous
canSAR (ICR)TMEM139 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM139
EVEXTMEM139
GoPubMedTMEM139
iHOPTMEM139
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:48:27 CET 2017

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