Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM139 (transmembrane protein 139)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM139
HGNC Alias symbFLJ90586
LocusID (NCBI) 135932
Atlas_Id 74802
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 143284899 and ends at 143288049 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM139   22058
Cards
Entrez_Gene (NCBI)TMEM139    transmembrane protein 139
Aliases
GeneCards (Weizmann)TMEM139
Ensembl hg19 (Hinxton)ENSG00000178826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178826 [Gene_View]  ENSG00000178826 [Sequence]  chr7:143284899-143288049 [Contig_View]  TMEM139 [Vega]
ICGC DataPortalENSG00000178826
TCGA cBioPortalTMEM139
AceView (NCBI)TMEM139
Genatlas (Paris)TMEM139
SOURCE (Princeton)TMEM139
Genetics Home Reference (NIH)TMEM139
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM139  -     chr7:143284899-143288049 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM139  -     7q34   [Description]    (hg19-Feb_2009)
GoldenPathTMEM139 - 7q34 [CytoView hg19]  TMEM139 - 7q34 [CytoView hg38]
ImmunoBaseENSG00000178826
Genome Data Viewer NCBITMEM139 [Mapview hg19]  
OMIM616524   
Gene and transcription
Genbank (Entrez)AK027352 AK075067 AK172816 AK315170 AY358781
RefSeq transcript (Entrez)NM_001242773 NM_001242774 NM_001242775 NM_001282876 NM_001282877 NM_153345
Consensus coding sequences : CCDS (NCBI)TMEM139
Gene ExpressionTMEM139 [ NCBI-GEO ]   TMEM139 [ EBI - ARRAY_EXPRESS ]   TMEM139 [ SEEK ]   TMEM139 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM139 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM139 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135932
GTEX Portal (Tissue expression)TMEM139
Human Protein AtlasENSG00000178826-TMEM139 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV31
PhosPhoSitePlusQ8IV31
Domains : Interpro (EBI)TMEM139   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM139
SuperfamilyQ8IV31
AlphaFold pdb e-kbQ8IV31   
Human Protein Atlas [tissue]ENSG00000178826-TMEM139 [tissue]
HPRD08298
Protein Interaction databases
DIP (DOE-UCLA)Q8IV31
IntAct (EBI)Q8IV31
BioGRIDTMEM139
STRING (EMBL)TMEM139
ZODIACTMEM139
Ontologies - Pathways
QuickGOQ8IV31
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTMEM139
Atlas of Cancer Signalling NetworkTMEM139
Wikipedia pathwaysTMEM139
Orthology - Evolution
OrthoDB135932
GeneTree (enSembl)ENSG00000178826
Phylogenetic Trees/Animal Genes : TreeFamTMEM139
Homologs : HomoloGeneTMEM139
Homology/Alignments : Family Browser (UCSC)TMEM139
Gene fusions - Rearrangements
Fusion : QuiverTMEM139
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM139 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM139
dbVarTMEM139
ClinVarTMEM139
MonarchTMEM139
1000_GenomesTMEM139 
Exome Variant ServerTMEM139
GNOMAD BrowserENSG00000178826
Varsome BrowserTMEM139
ACMGTMEM139 variants
VarityQ8IV31
Genomic Variants (DGV)TMEM139 [DGVbeta]
DECIPHERTMEM139 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM139 
Mutations
ICGC Data PortalTMEM139 
TCGA Data PortalTMEM139 
Broad Tumor PortalTMEM139
OASIS PortalTMEM139 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM139  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM139
Mutations and Diseases : HGMDTMEM139
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM139
DgiDB (Drug Gene Interaction Database)TMEM139
DoCM (Curated mutations)TMEM139
CIViC (Clinical Interpretations of Variants in Cancer)TMEM139
Cancer3DTMEM139
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616524   
Orphanet
DisGeNETTMEM139
MedgenTMEM139
Genetic Testing Registry TMEM139
NextProtQ8IV31 [Medical]
GENETestsTMEM139
Target ValidationTMEM139
Huge Navigator TMEM139 [HugePedia]
ClinGenTMEM139
Clinical trials, drugs, therapy
MyCancerGenomeTMEM139
Protein Interactions : CTDTMEM139
Pharm GKB GenePA144596260
PharosQ8IV31
Clinical trialTMEM139
Miscellaneous
canSAR (ICR)TMEM139
HarmonizomeTMEM139
DataMed IndexTMEM139
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM139
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:49 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.