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TMEM143 (transmembrane protein 143)

Identity

Alias (NCBI)-
HGNC (Hugo) TMEM143
HGNC Alias symbFLJ10922
LocusID (NCBI) 55260
Atlas_Id 74805
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48332356 and ends at 48363940 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM143   25603
Cards
Entrez_Gene (NCBI)TMEM143    transmembrane protein 143
Aliases
GeneCards (Weizmann)TMEM143
Ensembl hg19 (Hinxton)ENSG00000161558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161558 [Gene_View]  ENSG00000161558 [Sequence]  chr19:48332356-48363940 [Contig_View]  TMEM143 [Vega]
ICGC DataPortalENSG00000161558
TCGA cBioPortalTMEM143
AceView (NCBI)TMEM143
Genatlas (Paris)TMEM143
SOURCE (Princeton)TMEM143
Genetics Home Reference (NIH)TMEM143
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM143  -     chr19:48332356-48363940 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM143  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathTMEM143 - 19q13.33 [CytoView hg19]  TMEM143 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000161558
Genome Data Viewer NCBITMEM143 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK129801 AK291521 AK294408 AK297591 AK297610
RefSeq transcript (Entrez)NM_001303538 NM_001303539 NM_001303540 NM_018273
Consensus coding sequences : CCDS (NCBI)TMEM143
Gene ExpressionTMEM143 [ NCBI-GEO ]   TMEM143 [ EBI - ARRAY_EXPRESS ]   TMEM143 [ SEEK ]   TMEM143 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM143 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM143 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55260
GTEX Portal (Tissue expression)TMEM143
Human Protein AtlasENSG00000161558-TMEM143 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AN5
PhosPhoSitePlusQ96AN5
Domains : Interpro (EBI)DUF3754   
Domain families : Pfam (Sanger)DUF3754 (PF12576)   
Domain families : Pfam (NCBI)pfam12576   
Conserved Domain (NCBI)TMEM143
SuperfamilyQ96AN5
AlphaFold pdb e-kbQ96AN5   
Human Protein Atlas [tissue]ENSG00000161558-TMEM143 [tissue]
HPRD08556
Protein Interaction databases
DIP (DOE-UCLA)Q96AN5
IntAct (EBI)Q96AN5
BioGRIDTMEM143
STRING (EMBL)TMEM143
ZODIACTMEM143
Ontologies - Pathways
QuickGOQ96AN5
Ontology : AmiGOmolecular_function  protein binding  mitochondrion  mitochondrion  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  protein binding  mitochondrion  mitochondrion  biological_process  integral component of membrane  
NDEx NetworkTMEM143
Atlas of Cancer Signalling NetworkTMEM143
Wikipedia pathwaysTMEM143
Orthology - Evolution
OrthoDB55260
GeneTree (enSembl)ENSG00000161558
Phylogenetic Trees/Animal Genes : TreeFamTMEM143
Homologs : HomoloGeneTMEM143
Homology/Alignments : Family Browser (UCSC)TMEM143
Gene fusions - Rearrangements
Fusion : QuiverTMEM143
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM143 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM143
dbVarTMEM143
ClinVarTMEM143
MonarchTMEM143
1000_GenomesTMEM143 
Exome Variant ServerTMEM143
GNOMAD BrowserENSG00000161558
Varsome BrowserTMEM143
ACMGTMEM143 variants
VarityQ96AN5
Genomic Variants (DGV)TMEM143 [DGVbeta]
DECIPHERTMEM143 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM143 
Mutations
ICGC Data PortalTMEM143 
TCGA Data PortalTMEM143 
Broad Tumor PortalTMEM143
OASIS PortalTMEM143 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM143  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM143
Mutations and Diseases : HGMDTMEM143
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM143
DgiDB (Drug Gene Interaction Database)TMEM143
DoCM (Curated mutations)TMEM143
CIViC (Clinical Interpretations of Variants in Cancer)TMEM143
Cancer3DTMEM143
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM143
MedgenTMEM143
Genetic Testing Registry TMEM143
NextProtQ96AN5 [Medical]
GENETestsTMEM143
Target ValidationTMEM143
Huge Navigator TMEM143 [HugePedia]
ClinGenTMEM143
Clinical trials, drugs, therapy
MyCancerGenomeTMEM143
Protein Interactions : CTDTMEM143
Pharm GKB GenePA144596251
PharosQ96AN5
Clinical trialTMEM143
Miscellaneous
canSAR (ICR)TMEM143
HarmonizomeTMEM143
DataMed IndexTMEM143
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM143
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:49 CEST 2021

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