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TMEM143 (transmembrane protein 143)

Identity

Alias_symbol (synonym)FLJ10922
Other alias-
HGNC (Hugo) TMEM143
LocusID (NCBI) 55260
Atlas_Id 74805
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48332356 and ends at 48364237 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM143   25603
Cards
Entrez_Gene (NCBI)TMEM143  55260  transmembrane protein 143
Aliases
GeneCards (Weizmann)TMEM143
Ensembl hg19 (Hinxton)ENSG00000161558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161558 [Gene_View]  chr19:48332356-48364237 [Contig_View]  TMEM143 [Vega]
ICGC DataPortalENSG00000161558
TCGA cBioPortalTMEM143
AceView (NCBI)TMEM143
Genatlas (Paris)TMEM143
WikiGenes55260
SOURCE (Princeton)TMEM143
Genetics Home Reference (NIH)TMEM143
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM143  -     chr19:48332356-48364237 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM143  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblTMEM143 - 19q13.33 [CytoView hg19]  TMEM143 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBITMEM143 [Mapview hg19]  TMEM143 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129801 AK291521 AK294408 AK297591 AK297610
RefSeq transcript (Entrez)NM_001303538 NM_001303539 NM_001303540 NM_018273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM143
Cluster EST : UnigeneHs.351335 [ NCBI ]
CGAP (NCI)Hs.351335
Alternative Splicing GalleryENSG00000161558
Gene ExpressionTMEM143 [ NCBI-GEO ]   TMEM143 [ EBI - ARRAY_EXPRESS ]   TMEM143 [ SEEK ]   TMEM143 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM143 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55260
GTEX Portal (Tissue expression)TMEM143
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AN5
Splice isoforms : SwissVarQ96AN5
PhosPhoSitePlusQ96AN5
Domains : Interpro (EBI)DUF3754   
Domain families : Pfam (Sanger)DUF3754 (PF12576)   
Domain families : Pfam (NCBI)pfam12576   
Conserved Domain (NCBI)TMEM143
DMDM Disease mutations55260
Blocks (Seattle)TMEM143
SuperfamilyQ96AN5
Human Protein AtlasENSG00000161558
Peptide AtlasQ96AN5
HPRD08556
IPIIPI00303120   IPI00432768   IPI00385841   IPI01011656   IPI00910361   IPI00910993   
Protein Interaction databases
DIP (DOE-UCLA)Q96AN5
IntAct (EBI)Q96AN5
FunCoupENSG00000161558
BioGRIDTMEM143
STRING (EMBL)TMEM143
ZODIACTMEM143
Ontologies - Pathways
QuickGOQ96AN5
Ontology : AmiGOmolecular_function  mitochondrion  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  mitochondrion  biological_process  integral component of membrane  
NDEx NetworkTMEM143
Atlas of Cancer Signalling NetworkTMEM143
Wikipedia pathwaysTMEM143
Orthology - Evolution
OrthoDB55260
GeneTree (enSembl)ENSG00000161558
Phylogenetic Trees/Animal Genes : TreeFamTMEM143
HOVERGENQ96AN5
HOGENOMQ96AN5
Homologs : HomoloGeneTMEM143
Homology/Alignments : Family Browser (UCSC)TMEM143
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM143 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM143
dbVarTMEM143
ClinVarTMEM143
1000_GenomesTMEM143 
Exome Variant ServerTMEM143
ExAC (Exome Aggregation Consortium)TMEM143 (select the gene name)
Genetic variants : HAPMAP55260
Genomic Variants (DGV)TMEM143 [DGVbeta]
DECIPHERTMEM143 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM143 
Mutations
ICGC Data PortalTMEM143 
TCGA Data PortalTMEM143 
Broad Tumor PortalTMEM143
OASIS PortalTMEM143 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM143  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM143
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TMEM143
DgiDB (Drug Gene Interaction Database)TMEM143
DoCM (Curated mutations)TMEM143 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM143 (select a term)
intoGenTMEM143
Cancer3DTMEM143(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM143
Genetic Testing Registry TMEM143
NextProtQ96AN5 [Medical]
TSGene55260
GENETestsTMEM143
Huge Navigator TMEM143 [HugePedia]
snp3D : Map Gene to Disease55260
BioCentury BCIQTMEM143
ClinGenTMEM143
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55260
Chemical/Pharm GKB GenePA144596251
Clinical trialTMEM143
Miscellaneous
canSAR (ICR)TMEM143 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM143
EVEXTMEM143
GoPubMedTMEM143
iHOPTMEM143
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:58:24 CEST 2017

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