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TMEM150A (transmembrane protein 150A)

Identity

Alias_namesTMEM150
transmembrane protein 150
Alias_symbol (synonym)TM6P1
FLJ90024
Other aliasTTN1
HGNC (Hugo) TMEM150A
LocusID (NCBI) 129303
Atlas_Id 74813
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85598547 and ends at 85602699 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSGALNACT1 (8p21.3) / TMEM150A (2p11.2)TMEM150A (2p11.2) / CAPN10 (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM150A   24677
Cards
Entrez_Gene (NCBI)TMEM150A  129303  transmembrane protein 150A
AliasesTM6P1; TMEM150; TTN1
GeneCards (Weizmann)TMEM150A
Ensembl hg19 (Hinxton)ENSG00000168890 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168890 [Gene_View]  chr2:85598547-85602699 [Contig_View]  TMEM150A [Vega]
ICGC DataPortalENSG00000168890
TCGA cBioPortalTMEM150A
AceView (NCBI)TMEM150A
Genatlas (Paris)TMEM150A
WikiGenes129303
SOURCE (Princeton)TMEM150A
Genetics Home Reference (NIH)TMEM150A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM150A  -     chr2:85598547-85602699 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM150A  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM150A - 2p11.2 [CytoView hg19]  TMEM150A - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBITMEM150A [Mapview hg19]  TMEM150A [Mapview hg38]
OMIM616757   
Gene and transcription
Genbank (Entrez)AK074505 AK098152 AK291879 AM392524 AW009533
RefSeq transcript (Entrez)NM_001031738 NM_153342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM150A
Cluster EST : UnigeneHs.591559 [ NCBI ]
CGAP (NCI)Hs.591559
Alternative Splicing GalleryENSG00000168890
Gene ExpressionTMEM150A [ NCBI-GEO ]   TMEM150A [ EBI - ARRAY_EXPRESS ]   TMEM150A [ SEEK ]   TMEM150A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM150A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129303
GTEX Portal (Tissue expression)TMEM150A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TG1
Splice isoforms : SwissVarQ86TG1
PhosPhoSitePlusQ86TG1
Domains : Interpro (EBI)Frag1/DRAM/Sfk1    TMEM150A   
Domain families : Pfam (Sanger)Frag1 (PF10277)   
Domain families : Pfam (NCBI)pfam10277   
Conserved Domain (NCBI)TMEM150A
DMDM Disease mutations129303
Blocks (Seattle)TMEM150A
SuperfamilyQ86TG1
Human Protein AtlasENSG00000168890
Peptide AtlasQ86TG1
HPRD17006
IPIIPI00384093   IPI00180665   IPI00917713   IPI00915895   IPI00915758   
Protein Interaction databases
DIP (DOE-UCLA)Q86TG1
IntAct (EBI)Q86TG1
FunCoupENSG00000168890
BioGRIDTMEM150A
STRING (EMBL)TMEM150A
ZODIACTMEM150A
Ontologies - Pathways
QuickGOQ86TG1
Ontology : AmiGOprotein binding  lysosome  integral component of plasma membrane  catabolic process  phosphatidylinositol phosphorylation  establishment of protein localization to plasma membrane  
Ontology : EGO-EBIprotein binding  lysosome  integral component of plasma membrane  catabolic process  phosphatidylinositol phosphorylation  establishment of protein localization to plasma membrane  
NDEx NetworkTMEM150A
Atlas of Cancer Signalling NetworkTMEM150A
Wikipedia pathwaysTMEM150A
Orthology - Evolution
OrthoDB129303
GeneTree (enSembl)ENSG00000168890
Phylogenetic Trees/Animal Genes : TreeFamTMEM150A
HOVERGENQ86TG1
HOGENOMQ86TG1
Homologs : HomoloGeneTMEM150A
Homology/Alignments : Family Browser (UCSC)TMEM150A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM150A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM150A
dbVarTMEM150A
ClinVarTMEM150A
1000_GenomesTMEM150A 
Exome Variant ServerTMEM150A
ExAC (Exome Aggregation Consortium)TMEM150A (select the gene name)
Genetic variants : HAPMAP129303
Genomic Variants (DGV)TMEM150A [DGVbeta]
DECIPHERTMEM150A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM150A 
Mutations
ICGC Data PortalTMEM150A 
TCGA Data PortalTMEM150A 
Broad Tumor PortalTMEM150A
OASIS PortalTMEM150A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM150A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM150A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM150A
DgiDB (Drug Gene Interaction Database)TMEM150A
DoCM (Curated mutations)TMEM150A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM150A (select a term)
intoGenTMEM150A
Cancer3DTMEM150A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616757   
Orphanet
MedgenTMEM150A
Genetic Testing Registry TMEM150A
NextProtQ86TG1 [Medical]
TSGene129303
GENETestsTMEM150A
Target ValidationTMEM150A
Huge Navigator TMEM150A [HugePedia]
snp3D : Map Gene to Disease129303
BioCentury BCIQTMEM150A
ClinGenTMEM150A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129303
Chemical/Pharm GKB GenePA165697532
Clinical trialTMEM150A
Miscellaneous
canSAR (ICR)TMEM150A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM150A
EVEXTMEM150A
GoPubMedTMEM150A
iHOPTMEM150A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:45:55 CEST 2017

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