Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM150B (transmembrane protein 150B)

Identity

Alias_namesTMEM224
transmembrane protein 224
Other aliasDRAM3
TTN2
HGNC (Hugo) TMEM150B
LocusID (NCBI) 284417
Atlas_Id 74814
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55312801 and ends at 55325340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF587 (19q13.43) / TMEM150B (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM150B   34415
Cards
Entrez_Gene (NCBI)TMEM150B  284417  transmembrane protein 150B
AliasesDRAM3; TMEM224; TTN2
GeneCards (Weizmann)TMEM150B
Ensembl hg19 (Hinxton)ENSG00000180061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180061 [Gene_View]  chr19:55312801-55325340 [Contig_View]  TMEM150B [Vega]
ICGC DataPortalENSG00000180061
TCGA cBioPortalTMEM150B
AceView (NCBI)TMEM150B
Genatlas (Paris)TMEM150B
WikiGenes284417
SOURCE (Princeton)TMEM150B
Genetics Home Reference (NIH)TMEM150B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM150B  -     chr19:55312801-55325340 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM150B  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblTMEM150B - 19q13.42 [CytoView hg19]  TMEM150B - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBITMEM150B [Mapview hg19]  TMEM150B [Mapview hg38]
OMIM617291   
Gene and transcription
Genbank (Entrez)AU311823 BC020862 BC171893 BC171901 BC171904
RefSeq transcript (Entrez)NM_001085488 NM_001282011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM150B
Cluster EST : UnigeneHs.382625 [ NCBI ]
CGAP (NCI)Hs.382625
Alternative Splicing GalleryENSG00000180061
Gene ExpressionTMEM150B [ NCBI-GEO ]   TMEM150B [ EBI - ARRAY_EXPRESS ]   TMEM150B [ SEEK ]   TMEM150B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM150B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284417
GTEX Portal (Tissue expression)TMEM150B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC51
Splice isoforms : SwissVarA6NC51
PhosPhoSitePlusA6NC51
Domains : Interpro (EBI)Frag1/DRAM/Sfk1   
Domain families : Pfam (Sanger)Frag1 (PF10277)   
Domain families : Pfam (NCBI)pfam10277   
Conserved Domain (NCBI)TMEM150B
DMDM Disease mutations284417
Blocks (Seattle)TMEM150B
SuperfamilyA6NC51
Human Protein AtlasENSG00000180061
Peptide AtlasA6NC51
IPIIPI00174908   
Protein Interaction databases
DIP (DOE-UCLA)A6NC51
IntAct (EBI)A6NC51
FunCoupENSG00000180061
BioGRIDTMEM150B
STRING (EMBL)TMEM150B
ZODIACTMEM150B
Ontologies - Pathways
QuickGOA6NC51
Ontology : AmiGOlysosome  integral component of plasma membrane  
Ontology : EGO-EBIlysosome  integral component of plasma membrane  
NDEx NetworkTMEM150B
Atlas of Cancer Signalling NetworkTMEM150B
Wikipedia pathwaysTMEM150B
Orthology - Evolution
OrthoDB284417
GeneTree (enSembl)ENSG00000180061
Phylogenetic Trees/Animal Genes : TreeFamTMEM150B
HOVERGENA6NC51
HOGENOMA6NC51
Homologs : HomoloGeneTMEM150B
Homology/Alignments : Family Browser (UCSC)TMEM150B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM150B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM150B
dbVarTMEM150B
ClinVarTMEM150B
1000_GenomesTMEM150B 
Exome Variant ServerTMEM150B
ExAC (Exome Aggregation Consortium)TMEM150B (select the gene name)
Genetic variants : HAPMAP284417
Genomic Variants (DGV)TMEM150B [DGVbeta]
DECIPHERTMEM150B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM150B 
Mutations
ICGC Data PortalTMEM150B 
TCGA Data PortalTMEM150B 
Broad Tumor PortalTMEM150B
OASIS PortalTMEM150B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM150B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM150B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM150B
DgiDB (Drug Gene Interaction Database)TMEM150B
DoCM (Curated mutations)TMEM150B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM150B (select a term)
intoGenTMEM150B
Cancer3DTMEM150B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617291   
Orphanet
MedgenTMEM150B
Genetic Testing Registry TMEM150B
NextProtA6NC51 [Medical]
TSGene284417
GENETestsTMEM150B
Target ValidationTMEM150B
Huge Navigator TMEM150B [HugePedia]
snp3D : Map Gene to Disease284417
BioCentury BCIQTMEM150B
ClinGenTMEM150B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284417
Chemical/Pharm GKB GenePA165394503
Clinical trialTMEM150B
Miscellaneous
canSAR (ICR)TMEM150B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM150B
EVEXTMEM150B
GoPubMedTMEM150B
iHOPTMEM150B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:41:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.