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TMEM150C (transmembrane protein 150C)

Identity

Alias_symbol (synonym)FLJ12993
Other aliasTTN3
HGNC (Hugo) TMEM150C
LocusID (NCBI) 441027
Atlas_Id 74815
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 82484451 and ends at 82561973 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM150C (4q21.22) / SCD5 (4q21.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM150C   37263
Cards
Entrez_Gene (NCBI)TMEM150C  441027  transmembrane protein 150C
AliasesTTN3
GeneCards (Weizmann)TMEM150C
Ensembl hg19 (Hinxton)ENSG00000249242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249242 [Gene_View]  chr4:82484451-82561973 [Contig_View]  TMEM150C [Vega]
ICGC DataPortalENSG00000249242
TCGA cBioPortalTMEM150C
AceView (NCBI)TMEM150C
Genatlas (Paris)TMEM150C
WikiGenes441027
SOURCE (Princeton)TMEM150C
Genetics Home Reference (NIH)TMEM150C
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM150C  -     chr4:82484451-82561973 -  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM150C  -     4q21.22   [Description]    (hg19-Feb_2009)
EnsemblTMEM150C - 4q21.22 [CytoView hg19]  TMEM150C - 4q21.22 [CytoView hg38]
Mapping of homologs : NCBITMEM150C [Mapview hg19]  TMEM150C [Mapview hg38]
OMIM617292   
Gene and transcription
Genbank (Entrez)AK023055 AK297434 AK297512 AK299942 AK301116
RefSeq transcript (Entrez)NM_001080506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM150C
Cluster EST : UnigeneHs.507676 [ NCBI ]
CGAP (NCI)Hs.507676
Alternative Splicing GalleryENSG00000249242
Gene ExpressionTMEM150C [ NCBI-GEO ]   TMEM150C [ EBI - ARRAY_EXPRESS ]   TMEM150C [ SEEK ]   TMEM150C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM150C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441027
GTEX Portal (Tissue expression)TMEM150C
Human Protein AtlasENSG00000249242-TMEM150C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB9EJG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB9EJG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB9EJG8
Splice isoforms : SwissVarB9EJG8
PhosPhoSitePlusB9EJG8
Domains : Interpro (EBI)Frag1/DRAM/Sfk1   
Domain families : Pfam (Sanger)Frag1 (PF10277)   
Domain families : Pfam (NCBI)pfam10277   
Conserved Domain (NCBI)TMEM150C
DMDM Disease mutations441027
Blocks (Seattle)TMEM150C
SuperfamilyB9EJG8
Human Protein Atlas [tissue]ENSG00000249242-TMEM150C [tissue]
Peptide AtlasB9EJG8
IPIIPI00740911   IPI00921915   IPI00853528   IPI00969096   
Protein Interaction databases
DIP (DOE-UCLA)B9EJG8
IntAct (EBI)B9EJG8
FunCoupENSG00000249242
BioGRIDTMEM150C
STRING (EMBL)TMEM150C
ZODIACTMEM150C
Ontologies - Pathways
QuickGOB9EJG8
Ontology : AmiGOlysosome  lysosomal membrane  integral component of plasma membrane  
Ontology : EGO-EBIlysosome  lysosomal membrane  integral component of plasma membrane  
NDEx NetworkTMEM150C
Atlas of Cancer Signalling NetworkTMEM150C
Wikipedia pathwaysTMEM150C
Orthology - Evolution
OrthoDB441027
GeneTree (enSembl)ENSG00000249242
Phylogenetic Trees/Animal Genes : TreeFamTMEM150C
HOVERGENB9EJG8
HOGENOMB9EJG8
Homologs : HomoloGeneTMEM150C
Homology/Alignments : Family Browser (UCSC)TMEM150C
Gene fusions - Rearrangements
Fusion: Tumor Portal TMEM150C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM150C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM150C
dbVarTMEM150C
ClinVarTMEM150C
1000_GenomesTMEM150C 
Exome Variant ServerTMEM150C
ExAC (Exome Aggregation Consortium)ENSG00000249242
GNOMAD BrowserENSG00000249242
Genetic variants : HAPMAP441027
Genomic Variants (DGV)TMEM150C [DGVbeta]
DECIPHERTMEM150C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM150C 
Mutations
ICGC Data PortalTMEM150C 
TCGA Data PortalTMEM150C 
Broad Tumor PortalTMEM150C
OASIS PortalTMEM150C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM150C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM150C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM150C
DgiDB (Drug Gene Interaction Database)TMEM150C
DoCM (Curated mutations)TMEM150C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM150C (select a term)
intoGenTMEM150C
Cancer3DTMEM150C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617292   
Orphanet
MedgenTMEM150C
Genetic Testing Registry TMEM150C
NextProtB9EJG8 [Medical]
TSGene441027
GENETestsTMEM150C
Target ValidationTMEM150C
Huge Navigator TMEM150C [HugePedia]
snp3D : Map Gene to Disease441027
BioCentury BCIQTMEM150C
ClinGenTMEM150C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441027
Chemical/Pharm GKB GenePA165664735
Clinical trialTMEM150C
Miscellaneous
canSAR (ICR)TMEM150C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM150C
EVEXTMEM150C
GoPubMedTMEM150C
iHOPTMEM150C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:46 CET 2017

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