Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM154 (transmembrane protein 154)

Identity

Alias_symbol (synonym)FLJ32028
Other alias-
HGNC (Hugo) TMEM154
LocusID (NCBI) 201799
Atlas_Id 74818
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 152626114 and ends at 152680165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBXW7 (4q31.3) / TMEM154 (4q31.3)TMEM154 (4q31.3) / SLC39A11 (17q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM154   26489
Cards
Entrez_Gene (NCBI)TMEM154  201799  transmembrane protein 154
Aliases
GeneCards (Weizmann)TMEM154
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:152626114-152680165 [Contig_View]  TMEM154 [Vega]
TCGA cBioPortalTMEM154
AceView (NCBI)TMEM154
Genatlas (Paris)TMEM154
WikiGenes201799
SOURCE (Princeton)TMEM154
Genetics Home Reference (NIH)TMEM154
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM154  -     chr4:152626114-152680165 -  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM154  -     4q31.3   [Description]    (hg19-Feb_2009)
EnsemblTMEM154 - 4q31.3 [CytoView hg19]  TMEM154 - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBITMEM154 [Mapview hg19]  TMEM154 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056590 AK296694 AK309319 BC019600 BC060775
RefSeq transcript (Entrez)NM_152680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM154
Cluster EST : UnigeneHs.518900 [ NCBI ]
CGAP (NCI)Hs.518900
Gene ExpressionTMEM154 [ NCBI-GEO ]   TMEM154 [ EBI - ARRAY_EXPRESS ]   TMEM154 [ SEEK ]   TMEM154 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM154 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201799
GTEX Portal (Tissue expression)TMEM154
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P9G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P9G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P9G4
Splice isoforms : SwissVarQ6P9G4
PhosPhoSitePlusQ6P9G4
Domains : Interpro (EBI)TMEM154   
Domain families : Pfam (Sanger)TMEM154 (PF15102)   
Domain families : Pfam (NCBI)pfam15102   
Conserved Domain (NCBI)TMEM154
DMDM Disease mutations201799
Blocks (Seattle)TMEM154
SuperfamilyQ6P9G4
Peptide AtlasQ6P9G4
HPRD08719
IPIIPI00043273   IPI00966988   
Protein Interaction databases
DIP (DOE-UCLA)Q6P9G4
IntAct (EBI)Q6P9G4
BioGRIDTMEM154
STRING (EMBL)TMEM154
ZODIACTMEM154
Ontologies - Pathways
QuickGOQ6P9G4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM154
Atlas of Cancer Signalling NetworkTMEM154
Wikipedia pathwaysTMEM154
Orthology - Evolution
OrthoDB201799
Phylogenetic Trees/Animal Genes : TreeFamTMEM154
HOVERGENQ6P9G4
HOGENOMQ6P9G4
Homologs : HomoloGeneTMEM154
Homology/Alignments : Family Browser (UCSC)TMEM154
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM154 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM154
dbVarTMEM154
ClinVarTMEM154
1000_GenomesTMEM154 
Exome Variant ServerTMEM154
ExAC (Exome Aggregation Consortium)TMEM154 (select the gene name)
Genetic variants : HAPMAP201799
Genomic Variants (DGV)TMEM154 [DGVbeta]
DECIPHERTMEM154 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM154 
Mutations
ICGC Data PortalTMEM154 
TCGA Data PortalTMEM154 
Broad Tumor PortalTMEM154
OASIS PortalTMEM154 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM154  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM154
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM154
DgiDB (Drug Gene Interaction Database)TMEM154
DoCM (Curated mutations)TMEM154 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM154 (select a term)
intoGenTMEM154
Cancer3DTMEM154(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM154
Genetic Testing Registry TMEM154
NextProtQ6P9G4 [Medical]
TSGene201799
GENETestsTMEM154
Target ValidationTMEM154
Huge Navigator TMEM154 [HugePedia]
snp3D : Map Gene to Disease201799
BioCentury BCIQTMEM154
ClinGenTMEM154
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201799
Chemical/Pharm GKB GenePA145007430
Clinical trialTMEM154
Miscellaneous
canSAR (ICR)TMEM154 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM154
EVEXTMEM154
GoPubMedTMEM154
iHOPTMEM154
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:45:56 CEST 2017

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