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TMEM158 (transmembrane protein 158 (gene/pseudogene))

Identity

Alias_namestransmembrane protein 158
Alias_symbol (synonym)RIS1
p40BBp
Other aliasBBP
p40BBP
HGNC (Hugo) TMEM158
LocusID (NCBI) 25907
Atlas_Id 489
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 45265956 and ends at 45267814 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TMEM158 (3p21.31) / CELF2 (10p14)TMEM158 (3p21.31) / RYR1 (19q13.2)TMEM158 (3p21.31) / TMEM158 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM158   30293
Cards
Entrez_Gene (NCBI)TMEM158  25907  transmembrane protein 158 (gene/pseudogene)
AliasesBBP; RIS1; p40BBP
GeneCards (Weizmann)TMEM158
Ensembl hg19 (Hinxton)ENSG00000249992 [Gene_View]  chr3:45265956-45267814 [Contig_View]  TMEM158 [Vega]
Ensembl hg38 (Hinxton)ENSG00000249992 [Gene_View]  chr3:45265956-45267814 [Contig_View]  TMEM158 [Vega]
ICGC DataPortalENSG00000249992
TCGA cBioPortalTMEM158
AceView (NCBI)TMEM158
Genatlas (Paris)TMEM158
WikiGenes25907
SOURCE (Princeton)TMEM158
Genetics Home Reference (NIH)TMEM158
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM158  -     chr3:45265956-45267814 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM158  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblTMEM158 - 3p21.31 [CytoView hg19]  TMEM158 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBITMEM158 [Mapview hg19]  TMEM158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB078417 AF438313 AL080235 BC057390 BQ000094
RefSeq transcript (Entrez)NM_015444
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)TMEM158
Cluster EST : UnigeneHs.740403 [ NCBI ]
CGAP (NCI)Hs.740403
Alternative Splicing GalleryENSG00000249992
Gene ExpressionTMEM158 [ NCBI-GEO ]   TMEM158 [ EBI - ARRAY_EXPRESS ]   TMEM158 [ SEEK ]   TMEM158 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25907
GTEX Portal (Tissue expression)TMEM158
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ71
Splice isoforms : SwissVarQ8WZ71
PhosPhoSitePlusQ8WZ71
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM158
DMDM Disease mutations25907
Blocks (Seattle)TMEM158
SuperfamilyQ8WZ71
Human Protein AtlasENSG00000249992
Peptide AtlasQ8WZ71
HPRD15252
IPIIPI00103864   IPI00845502   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ71
IntAct (EBI)Q8WZ71
FunCoupENSG00000249992
BioGRIDTMEM158
STRING (EMBL)TMEM158
ZODIACTMEM158
Ontologies - Pathways
QuickGOQ8WZ71
Ontology : AmiGOintegral component of membrane  peptide binding  
Ontology : EGO-EBIintegral component of membrane  peptide binding  
NDEx NetworkTMEM158
Atlas of Cancer Signalling NetworkTMEM158
Wikipedia pathwaysTMEM158
Orthology - Evolution
OrthoDB25907
GeneTree (enSembl)ENSG00000249992
Phylogenetic Trees/Animal Genes : TreeFamTMEM158
HOVERGENQ8WZ71
HOGENOMQ8WZ71
Homologs : HomoloGeneTMEM158
Homology/Alignments : Family Browser (UCSC)TMEM158
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM158 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM158
dbVarTMEM158
ClinVarTMEM158
1000_GenomesTMEM158 
Exome Variant ServerTMEM158
ExAC (Exome Aggregation Consortium)TMEM158 (select the gene name)
Genetic variants : HAPMAP25907
Genomic Variants (DGV)TMEM158 [DGVbeta]
DECIPHER (Syndromes)3:45265956-45267814  ENSG00000249992
CONAN: Copy Number AnalysisTMEM158 
Mutations
ICGC Data PortalTMEM158 
TCGA Data PortalTMEM158 
Broad Tumor PortalTMEM158
OASIS PortalTMEM158 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM158  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM158
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM158
DgiDB (Drug Gene Interaction Database)TMEM158
DoCM (Curated mutations)TMEM158 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM158 (select a term)
intoGenTMEM158
Cancer3DTMEM158(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM158
Genetic Testing Registry TMEM158
NextProtQ8WZ71 [Medical]
TSGene25907
GENETestsTMEM158
Huge Navigator TMEM158 [HugePedia]
snp3D : Map Gene to Disease25907
BioCentury BCIQTMEM158
ClinGenTMEM158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25907
Chemical/Pharm GKB GenePA128395777
Clinical trialTMEM158
Miscellaneous
canSAR (ICR)TMEM158 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM158
EVEXTMEM158
GoPubMedTMEM158
iHOPTMEM158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:31:25 CET 2017

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