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TMEM160 (transmembrane protein 160)

Identity

Alias_symbol (synonym)FLJ20512
Other alias-
HGNC (Hugo) TMEM160
LocusID (NCBI) 54958
Atlas_Id 74822
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 47045909 and ends at 47048624 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM160   26042
Cards
Entrez_Gene (NCBI)TMEM160  54958  transmembrane protein 160
Aliases
GeneCards (Weizmann)TMEM160
Ensembl hg19 (Hinxton)ENSG00000130748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130748 [Gene_View]  chr19:47045909-47048624 [Contig_View]  TMEM160 [Vega]
ICGC DataPortalENSG00000130748
TCGA cBioPortalTMEM160
AceView (NCBI)TMEM160
Genatlas (Paris)TMEM160
WikiGenes54958
SOURCE (Princeton)TMEM160
Genetics Home Reference (NIH)TMEM160
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM160  -     chr19:47045909-47048624 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM160  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblTMEM160 - 19q13.32 [CytoView hg19]  TMEM160 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBITMEM160 [Mapview hg19]  TMEM160 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000519 BC002907
RefSeq transcript (Entrez)NM_017854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM160
Cluster EST : UnigeneHs.105606 [ NCBI ]
CGAP (NCI)Hs.105606
Alternative Splicing GalleryENSG00000130748
Gene ExpressionTMEM160 [ NCBI-GEO ]   TMEM160 [ EBI - ARRAY_EXPRESS ]   TMEM160 [ SEEK ]   TMEM160 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54958
GTEX Portal (Tissue expression)TMEM160
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX00
Splice isoforms : SwissVarQ9NX00
PhosPhoSitePlusQ9NX00
Domains : Interpro (EBI)TMEM160   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM160
DMDM Disease mutations54958
Blocks (Seattle)TMEM160
SuperfamilyQ9NX00
Human Protein AtlasENSG00000130748
Peptide AtlasQ9NX00
HPRD07920
IPIIPI00550380   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX00
IntAct (EBI)Q9NX00
FunCoupENSG00000130748
BioGRIDTMEM160
STRING (EMBL)TMEM160
ZODIACTMEM160
Ontologies - Pathways
QuickGOQ9NX00
Ontology : AmiGOmitochondrion  integral component of membrane  
Ontology : EGO-EBImitochondrion  integral component of membrane  
NDEx NetworkTMEM160
Atlas of Cancer Signalling NetworkTMEM160
Wikipedia pathwaysTMEM160
Orthology - Evolution
OrthoDB54958
GeneTree (enSembl)ENSG00000130748
Phylogenetic Trees/Animal Genes : TreeFamTMEM160
HOVERGENQ9NX00
HOGENOMQ9NX00
Homologs : HomoloGeneTMEM160
Homology/Alignments : Family Browser (UCSC)TMEM160
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM160 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM160
dbVarTMEM160
ClinVarTMEM160
1000_GenomesTMEM160 
Exome Variant ServerTMEM160
ExAC (Exome Aggregation Consortium)TMEM160 (select the gene name)
Genetic variants : HAPMAP54958
Genomic Variants (DGV)TMEM160 [DGVbeta]
DECIPHERTMEM160 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM160 
Mutations
ICGC Data PortalTMEM160 
TCGA Data PortalTMEM160 
Broad Tumor PortalTMEM160
OASIS PortalTMEM160 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM160  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM160
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TMEM160
DgiDB (Drug Gene Interaction Database)TMEM160
DoCM (Curated mutations)TMEM160 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM160 (select a term)
intoGenTMEM160
Cancer3DTMEM160(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM160
Genetic Testing Registry TMEM160
NextProtQ9NX00 [Medical]
TSGene54958
GENETestsTMEM160
Target ValidationTMEM160
Huge Navigator TMEM160 [HugePedia]
snp3D : Map Gene to Disease54958
BioCentury BCIQTMEM160
ClinGenTMEM160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54958
Chemical/Pharm GKB GenePA145147949
Clinical trialTMEM160
Miscellaneous
canSAR (ICR)TMEM160 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM160
EVEXTMEM160
GoPubMedTMEM160
iHOPTMEM160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:43 CEST 2017

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