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TMEM161A (transmembrane protein 161A)

Identity

Alias_symbol (synonym)FLJ39645
FLJ20422
Other aliasAROS-29
HGNC (Hugo) TMEM161A
LocusID (NCBI) 54929
Atlas_Id 51314
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19119616 and ends at 19138501 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM161A (19p13.11) / ADCK4 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM161A   26020
Cards
Entrez_Gene (NCBI)TMEM161A  54929  transmembrane protein 161A
AliasesAROS-29
GeneCards (Weizmann)TMEM161A
Ensembl hg19 (Hinxton)ENSG00000064545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064545 [Gene_View]  chr19:19119616-19138501 [Contig_View]  TMEM161A [Vega]
ICGC DataPortalENSG00000064545
TCGA cBioPortalTMEM161A
AceView (NCBI)TMEM161A
Genatlas (Paris)TMEM161A
WikiGenes54929
SOURCE (Princeton)TMEM161A
Genetics Home Reference (NIH)TMEM161A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM161A  -     chr19:19119616-19138501 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM161A  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblTMEM161A - 19p13.11 [CytoView hg19]  TMEM161A - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBITMEM161A [Mapview hg19]  TMEM161A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000429 AK096964 AK225424 AY358088 BC005210
RefSeq transcript (Entrez)NM_001256766 NM_017814
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM161A
Cluster EST : UnigeneHs.631629 [ NCBI ]
CGAP (NCI)Hs.631629
Alternative Splicing GalleryENSG00000064545
Gene ExpressionTMEM161A [ NCBI-GEO ]   TMEM161A [ EBI - ARRAY_EXPRESS ]   TMEM161A [ SEEK ]   TMEM161A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM161A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54929
GTEX Portal (Tissue expression)TMEM161A
Human Protein AtlasENSG00000064545-TMEM161A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX61
Splice isoforms : SwissVarQ9NX61
PhosPhoSitePlusQ9NX61
Domains : Interpro (EBI)Transmembrane_161A/B   
Domain families : Pfam (Sanger)Tmemb_161AB (PF10268)   
Domain families : Pfam (NCBI)pfam10268   
Conserved Domain (NCBI)TMEM161A
DMDM Disease mutations54929
Blocks (Seattle)TMEM161A
SuperfamilyQ9NX61
Human Protein Atlas [tissue]ENSG00000064545-TMEM161A [tissue]
Peptide AtlasQ9NX61
HPRD07905
IPIIPI00301841   IPI00640585   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX61
IntAct (EBI)Q9NX61
FunCoupENSG00000064545
BioGRIDTMEM161A
STRING (EMBL)TMEM161A
ZODIACTMEM161A
Ontologies - Pathways
QuickGOQ9NX61
Ontology : AmiGOintegral component of membrane  response to retinoic acid  cellular response to oxidative stress  cellular response to UV  positive regulation of DNA repair  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage  
Ontology : EGO-EBIintegral component of membrane  response to retinoic acid  cellular response to oxidative stress  cellular response to UV  positive regulation of DNA repair  negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage  
NDEx NetworkTMEM161A
Atlas of Cancer Signalling NetworkTMEM161A
Wikipedia pathwaysTMEM161A
Orthology - Evolution
OrthoDB54929
GeneTree (enSembl)ENSG00000064545
Phylogenetic Trees/Animal Genes : TreeFamTMEM161A
HOVERGENQ9NX61
HOGENOMQ9NX61
Homologs : HomoloGeneTMEM161A
Homology/Alignments : Family Browser (UCSC)TMEM161A
Gene fusions - Rearrangements
Tumor Fusion PortalTMEM161A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM161A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM161A
dbVarTMEM161A
ClinVarTMEM161A
1000_GenomesTMEM161A 
Exome Variant ServerTMEM161A
ExAC (Exome Aggregation Consortium)ENSG00000064545
GNOMAD BrowserENSG00000064545
Genetic variants : HAPMAP54929
Genomic Variants (DGV)TMEM161A [DGVbeta]
DECIPHERTMEM161A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM161A 
Mutations
ICGC Data PortalTMEM161A 
TCGA Data PortalTMEM161A 
Broad Tumor PortalTMEM161A
OASIS PortalTMEM161A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM161A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM161A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM161A
DgiDB (Drug Gene Interaction Database)TMEM161A
DoCM (Curated mutations)TMEM161A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM161A (select a term)
intoGenTMEM161A
Cancer3DTMEM161A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM161A
MedgenTMEM161A
Genetic Testing Registry TMEM161A
NextProtQ9NX61 [Medical]
TSGene54929
GENETestsTMEM161A
Target ValidationTMEM161A
Huge Navigator TMEM161A [HugePedia]
snp3D : Map Gene to Disease54929
BioCentury BCIQTMEM161A
ClinGenTMEM161A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54929
Chemical/Pharm GKB GenePA145147959
Clinical trialTMEM161A
Miscellaneous
canSAR (ICR)TMEM161A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM161A
EVEXTMEM161A
GoPubMedTMEM161A
iHOPTMEM161A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:38:45 CET 2017

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