Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM161B (transmembrane protein 161B)

Identity

Alias (NCBI)FLB3342
PRO1313
HGNC (Hugo) TMEM161B
HGNC Alias symbMGC33214
LocusID (NCBI) 153396
Atlas_Id 74823
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 88195206 and ends at 88268879 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLIP1 (12q24.31) / TMEM161B (5q14.3)PPIP5K2 (5q21.1) / TMEM161B (5q14.3)TMEM161B (5q14.3) / CETN3 (5q14.3)
TMEM161B (5q14.3) / FAM81B (5q15)TMEM161B (5q14.3) / TMEM161B (5q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM161B   28483
Cards
Entrez_Gene (NCBI)TMEM161B    transmembrane protein 161B
AliasesFLB3342; PRO1313
GeneCards (Weizmann)TMEM161B
Ensembl hg19 (Hinxton)ENSG00000164180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164180 [Gene_View]  ENSG00000164180 [Sequence]  chr5:88195206-88268879 [Contig_View]  TMEM161B [Vega]
ICGC DataPortalENSG00000164180
TCGA cBioPortalTMEM161B
AceView (NCBI)TMEM161B
Genatlas (Paris)TMEM161B
SOURCE (Princeton)TMEM161B
Genetics Home Reference (NIH)TMEM161B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM161B  -     chr5:88195206-88268879 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM161B  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM161B - 5q14.3 [CytoView hg19]  TMEM161B - 5q14.3 [CytoView hg38]
ImmunoBaseENSG00000164180
Genome Data Viewer NCBITMEM161B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI570193 AK299896 AK300006 AK300893 AK301091
RefSeq transcript (Entrez)NM_001289007 NM_001289008 NM_001349400 NM_001349402 NM_001349403 NM_001349405 NM_001349407 NM_153354
Consensus coding sequences : CCDS (NCBI)TMEM161B
Gene ExpressionTMEM161B [ NCBI-GEO ]   TMEM161B [ EBI - ARRAY_EXPRESS ]   TMEM161B [ SEEK ]   TMEM161B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM161B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM161B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153396
GTEX Portal (Tissue expression)TMEM161B
Human Protein AtlasENSG00000164180-TMEM161B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDZ6
PhosPhoSitePlusQ8NDZ6
Domains : Interpro (EBI)Transmembrane_161A/B   
Domain families : Pfam (Sanger)Tmemb_161AB (PF10268)   
Domain families : Pfam (NCBI)pfam10268   
Conserved Domain (NCBI)TMEM161B
SuperfamilyQ8NDZ6
AlphaFold pdb e-kbQ8NDZ6   
Human Protein Atlas [tissue]ENSG00000164180-TMEM161B [tissue]
HPRD14555
Protein Interaction databases
DIP (DOE-UCLA)Q8NDZ6
IntAct (EBI)Q8NDZ6
BioGRIDTMEM161B
STRING (EMBL)TMEM161B
ZODIACTMEM161B
Ontologies - Pathways
QuickGOQ8NDZ6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM161B
Atlas of Cancer Signalling NetworkTMEM161B
Wikipedia pathwaysTMEM161B
Orthology - Evolution
OrthoDB153396
GeneTree (enSembl)ENSG00000164180
Phylogenetic Trees/Animal Genes : TreeFamTMEM161B
Homologs : HomoloGeneTMEM161B
Homology/Alignments : Family Browser (UCSC)TMEM161B
Gene fusions - Rearrangements
Fusion : QuiverTMEM161B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM161B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM161B
dbVarTMEM161B
ClinVarTMEM161B
MonarchTMEM161B
1000_GenomesTMEM161B 
Exome Variant ServerTMEM161B
GNOMAD BrowserENSG00000164180
Varsome BrowserTMEM161B
ACMGTMEM161B variants
VarityQ8NDZ6
Genomic Variants (DGV)TMEM161B [DGVbeta]
DECIPHERTMEM161B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM161B 
Mutations
ICGC Data PortalTMEM161B 
TCGA Data PortalTMEM161B 
Broad Tumor PortalTMEM161B
OASIS PortalTMEM161B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM161B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM161B
Mutations and Diseases : HGMDTMEM161B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM161B
DgiDB (Drug Gene Interaction Database)TMEM161B
DoCM (Curated mutations)TMEM161B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM161B
Cancer3DTMEM161B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM161B
MedgenTMEM161B
Genetic Testing Registry TMEM161B
NextProtQ8NDZ6 [Medical]
GENETestsTMEM161B
Target ValidationTMEM161B
Huge Navigator TMEM161B [HugePedia]
ClinGenTMEM161B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM161B
Protein Interactions : CTDTMEM161B
Pharm GKB GenePA145147987
PharosQ8NDZ6
Clinical trialTMEM161B
Miscellaneous
canSAR (ICR)TMEM161B
HarmonizomeTMEM161B
DataMed IndexTMEM161B
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM161B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:25:52 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.