Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TMEM163 (transmembrane protein 163)

Identity

Alias (NCBI)DC29
SV31
HGNC (Hugo) TMEM163
HGNC Alias symbDKFZP566N034
SV31
LocusID (NCBI) 81615
Atlas_Id 74825
Location 2q21.3  [Link to chromosome band 2q21]
Location_base_pair Starts at 134455759 and ends at 134719000 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GIGYF2 (2q37.1) / TMEM163 (2q21.3)MIR548A3 (3q13.11) / TMEM163 (2q21.3)TMEM163 (2q21.3) / TMEM163 (2q21.3)
ZRANB3 (2q21.3) / TMEM163 (2q21.3)ZRANB3 TMEM163GIGYF2 TMEM163

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM163   25380
Cards
Entrez_Gene (NCBI)TMEM163    transmembrane protein 163
AliasesDC29; SV31
GeneCards (Weizmann)TMEM163
Ensembl hg19 (Hinxton)ENSG00000152128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152128 [Gene_View]  ENSG00000152128 [Sequence]  chr2:134455759-134719000 [Contig_View]  TMEM163 [Vega]
ICGC DataPortalENSG00000152128
TCGA cBioPortalTMEM163
AceView (NCBI)TMEM163
Genatlas (Paris)TMEM163
SOURCE (Princeton)TMEM163
Genetics Home Reference (NIH)TMEM163
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM163  -     chr2:134455759-134719000 -  2q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM163  -     2q21.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM163 - 2q21.3 [CytoView hg19]  TMEM163 - 2q21.3 [CytoView hg38]
ImmunoBaseENSG00000152128
Genome Data Viewer NCBITMEM163 [Mapview hg19]  
OMIM618978   
Gene and transcription
Genbank (Entrez)AF255647 AI307369 AK054738 AL122044 AL833765
RefSeq transcript (Entrez)NM_030923
Consensus coding sequences : CCDS (NCBI)TMEM163
Gene ExpressionTMEM163 [ NCBI-GEO ]   TMEM163 [ EBI - ARRAY_EXPRESS ]   TMEM163 [ SEEK ]   TMEM163 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM163 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM163 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81615
GTEX Portal (Tissue expression)TMEM163
Human Protein AtlasENSG00000152128-TMEM163 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC26
PhosPhoSitePlusQ8TC26
Domains : Interpro (EBI)Cation_efflux_TMD_sf    Tmem163   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM163
SuperfamilyQ8TC26
AlphaFold pdb e-kbQ8TC26   
Human Protein Atlas [tissue]ENSG00000152128-TMEM163 [tissue]
HPRD13178
Protein Interaction databases
DIP (DOE-UCLA)Q8TC26
IntAct (EBI)Q8TC26
BioGRIDTMEM163
STRING (EMBL)TMEM163
ZODIACTMEM163
Ontologies - Pathways
QuickGOQ8TC26
Ontology : AmiGOzinc ion binding  zinc ion binding  membrane  integral component of synaptic vesicle membrane  integral component of synaptic vesicle membrane  early endosome membrane  zinc ion import into synaptic vesicle  
Ontology : EGO-EBIzinc ion binding  zinc ion binding  membrane  integral component of synaptic vesicle membrane  integral component of synaptic vesicle membrane  early endosome membrane  zinc ion import into synaptic vesicle  
NDEx NetworkTMEM163
Atlas of Cancer Signalling NetworkTMEM163
Wikipedia pathwaysTMEM163
Orthology - Evolution
OrthoDB81615
GeneTree (enSembl)ENSG00000152128
Phylogenetic Trees/Animal Genes : TreeFamTMEM163
Homologs : HomoloGeneTMEM163
Homology/Alignments : Family Browser (UCSC)TMEM163
Gene fusions - Rearrangements
Fusion : QuiverTMEM163
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM163 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM163
dbVarTMEM163
ClinVarTMEM163
MonarchTMEM163
1000_GenomesTMEM163 
Exome Variant ServerTMEM163
GNOMAD BrowserENSG00000152128
Varsome BrowserTMEM163
ACMGTMEM163 variants
VarityQ8TC26
Genomic Variants (DGV)TMEM163 [DGVbeta]
DECIPHERTMEM163 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM163 
Mutations
ICGC Data PortalTMEM163 
TCGA Data PortalTMEM163 
Broad Tumor PortalTMEM163
OASIS PortalTMEM163 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM163  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM163
Mutations and Diseases : HGMDTMEM163
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM163
DgiDB (Drug Gene Interaction Database)TMEM163
DoCM (Curated mutations)TMEM163
CIViC (Clinical Interpretations of Variants in Cancer)TMEM163
Cancer3DTMEM163
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618978   
Orphanet
DisGeNETTMEM163
MedgenTMEM163
Genetic Testing Registry TMEM163
NextProtQ8TC26 [Medical]
GENETestsTMEM163
Target ValidationTMEM163
Huge Navigator TMEM163 [HugePedia]
ClinGenTMEM163
Clinical trials, drugs, therapy
MyCancerGenomeTMEM163
Protein Interactions : CTDTMEM163
Pharm GKB GenePA145148025
PharosQ8TC26
Clinical trialTMEM163
Miscellaneous
canSAR (ICR)TMEM163
HarmonizomeTMEM163
DataMed IndexTMEM163
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM163
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:25:53 CEST 2021

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