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TMEM164 (transmembrane protein 164)

Identity

Alias_symbol (synonym)FLJ22679
RP13-360B22.2
Other aliasbB360B22.3
HGNC (Hugo) TMEM164
LocusID (NCBI) 84187
Atlas_Id 74826
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110002635 and ends at 110177788 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EFHC1 (6p12.2) / TMEM164 (Xq23)TMEM164 (Xq23) / HSP90AB1 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM164   26217
Cards
Entrez_Gene (NCBI)TMEM164  84187  transmembrane protein 164
AliasesbB360B22.3
GeneCards (Weizmann)TMEM164
Ensembl hg19 (Hinxton)ENSG00000157600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157600 [Gene_View]  chrX:110002635-110177788 [Contig_View]  TMEM164 [Vega]
ICGC DataPortalENSG00000157600
TCGA cBioPortalTMEM164
AceView (NCBI)TMEM164
Genatlas (Paris)TMEM164
WikiGenes84187
SOURCE (Princeton)TMEM164
Genetics Home Reference (NIH)TMEM164
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM164  -     chrX:110002635-110177788 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM164  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblTMEM164 - Xq23 [CytoView hg19]  TMEM164 - Xq23 [CytoView hg38]
Mapping of homologs : NCBITMEM164 [Mapview hg19]  TMEM164 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000180 AK026332 AK057084 AK094127 BC002716
RefSeq transcript (Entrez)NM_017698 NM_032227
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM164
Cluster EST : UnigeneHs.496572 [ NCBI ]
CGAP (NCI)Hs.496572
Alternative Splicing GalleryENSG00000157600
Gene ExpressionTMEM164 [ NCBI-GEO ]   TMEM164 [ EBI - ARRAY_EXPRESS ]   TMEM164 [ SEEK ]   TMEM164 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM164 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84187
GTEX Portal (Tissue expression)TMEM164
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U3C3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U3C3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U3C3
Splice isoforms : SwissVarQ5U3C3
PhosPhoSitePlusQ5U3C3
Domains : Interpro (EBI)TMEM164   
Domain families : Pfam (Sanger)TMEM164 (PF14808)   
Domain families : Pfam (NCBI)pfam14808   
Conserved Domain (NCBI)TMEM164
DMDM Disease mutations84187
Blocks (Seattle)TMEM164
SuperfamilyQ5U3C3
Human Protein AtlasENSG00000157600
Peptide AtlasQ5U3C3
HPRD06539
IPIIPI00479156   IPI00412019   IPI00944676   IPI00030984   
Protein Interaction databases
DIP (DOE-UCLA)Q5U3C3
IntAct (EBI)Q5U3C3
FunCoupENSG00000157600
BioGRIDTMEM164
STRING (EMBL)TMEM164
ZODIACTMEM164
Ontologies - Pathways
QuickGOQ5U3C3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM164
Atlas of Cancer Signalling NetworkTMEM164
Wikipedia pathwaysTMEM164
Orthology - Evolution
OrthoDB84187
GeneTree (enSembl)ENSG00000157600
Phylogenetic Trees/Animal Genes : TreeFamTMEM164
HOVERGENQ5U3C3
HOGENOMQ5U3C3
Homologs : HomoloGeneTMEM164
Homology/Alignments : Family Browser (UCSC)TMEM164
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM164 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM164
dbVarTMEM164
ClinVarTMEM164
1000_GenomesTMEM164 
Exome Variant ServerTMEM164
ExAC (Exome Aggregation Consortium)TMEM164 (select the gene name)
Genetic variants : HAPMAP84187
Genomic Variants (DGV)TMEM164 [DGVbeta]
DECIPHERTMEM164 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM164 
Mutations
ICGC Data PortalTMEM164 
TCGA Data PortalTMEM164 
Broad Tumor PortalTMEM164
OASIS PortalTMEM164 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM164  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM164
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM164
DgiDB (Drug Gene Interaction Database)TMEM164
DoCM (Curated mutations)TMEM164 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM164 (select a term)
intoGenTMEM164
Cancer3DTMEM164(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM164
Genetic Testing Registry TMEM164
NextProtQ5U3C3 [Medical]
TSGene84187
GENETestsTMEM164
Target ValidationTMEM164
Huge Navigator TMEM164 [HugePedia]
snp3D : Map Gene to Disease84187
BioCentury BCIQTMEM164
ClinGenTMEM164
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84187
Chemical/Pharm GKB GenePA145148045
Clinical trialTMEM164
Miscellaneous
canSAR (ICR)TMEM164 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM164
EVEXTMEM164
GoPubMedTMEM164
iHOPTMEM164
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:44 CEST 2017

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