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TMEM165 (transmembrane protein 165)

Identity

Alias (NCBI)CDG2K
FT27
GDT1
SLC64A1
TMPT27
TPARL
HGNC (Hugo) TMEM165
HGNC Alias symbTMPT27
TPARL
GDT1
SLC64A1
HGNC Alias nameTPA regulated locus
LocusID (NCBI) 55858
Atlas_Id 57768
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 55395957 and ends at 55426175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DMD (Xp21.2) / TMEM165 (4q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM165   30760
Cards
Entrez_Gene (NCBI)TMEM165    transmembrane protein 165
AliasesCDG2K; FT27; GDT1; SLC64A1; 
TMPT27; TPARL
GeneCards (Weizmann)TMEM165
Ensembl hg19 (Hinxton)ENSG00000134851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134851 [Gene_View]  ENSG00000134851 [Sequence]  chr4:55395957-55426175 [Contig_View]  TMEM165 [Vega]
ICGC DataPortalENSG00000134851
TCGA cBioPortalTMEM165
AceView (NCBI)TMEM165
Genatlas (Paris)TMEM165
SOURCE (Princeton)TMEM165
Genetics Home Reference (NIH)TMEM165
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM165  -     chr4:55395957-55426175 +  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM165  -     4q12   [Description]    (hg19-Feb_2009)
GoldenPathTMEM165 - 4q12 [CytoView hg19]  TMEM165 - 4q12 [CytoView hg38]
ImmunoBaseENSG00000134851
Genome Data Viewer NCBITMEM165 [Mapview hg19]  
OMIM614726   614727   
Gene and transcription
Genbank (Entrez)AF132746 AF183409 AF220188 AK026163 AK027162
RefSeq transcript (Entrez)NM_018475
Consensus coding sequences : CCDS (NCBI)TMEM165
Gene ExpressionTMEM165 [ NCBI-GEO ]   TMEM165 [ EBI - ARRAY_EXPRESS ]   TMEM165 [ SEEK ]   TMEM165 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM165 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM165 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55858
GTEX Portal (Tissue expression)TMEM165
Human Protein AtlasENSG00000134851-TMEM165 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC07
PhosPhoSitePlusQ9HC07
Domaine pattern : Prosite (Expaxy)UPF0016 (PS01214)   
Domains : Interpro (EBI)Gdt1   
Domain families : Pfam (Sanger)UPF0016 (PF01169)   
Domain families : Pfam (NCBI)pfam01169   
Conserved Domain (NCBI)TMEM165
SuperfamilyQ9HC07
AlphaFold pdb e-kbQ9HC07   
Human Protein Atlas [tissue]ENSG00000134851-TMEM165 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9HC07
IntAct (EBI)Q9HC07
BioGRIDTMEM165
STRING (EMBL)TMEM165
ZODIACTMEM165
Ontologies - Pathways
QuickGOQ9HC07
Ontology : AmiGOmanganese ion transmembrane transporter activity  lysosomal membrane  Golgi apparatus  Golgi apparatus  protein N-linked glycosylation  cellular calcium ion homeostasis  endosome membrane  calcium ion transmembrane transporter activity  integral component of membrane  early endosome membrane  late endosome membrane  Golgi calcium ion homeostasis  Golgi calcium ion transport  Golgi calcium ion transport  trans-Golgi network membrane  regulation of lysosomal lumen pH  intracellular membrane-bounded organelle  metal ion transmembrane transporter activity  calcium ion transmembrane transport  manganese ion transmembrane transport  
Ontology : EGO-EBImanganese ion transmembrane transporter activity  lysosomal membrane  Golgi apparatus  Golgi apparatus  protein N-linked glycosylation  cellular calcium ion homeostasis  endosome membrane  calcium ion transmembrane transporter activity  integral component of membrane  early endosome membrane  late endosome membrane  Golgi calcium ion homeostasis  Golgi calcium ion transport  Golgi calcium ion transport  trans-Golgi network membrane  regulation of lysosomal lumen pH  intracellular membrane-bounded organelle  metal ion transmembrane transporter activity  calcium ion transmembrane transport  manganese ion transmembrane transport  
NDEx NetworkTMEM165
Atlas of Cancer Signalling NetworkTMEM165
Wikipedia pathwaysTMEM165
Orthology - Evolution
OrthoDB55858
GeneTree (enSembl)ENSG00000134851
Phylogenetic Trees/Animal Genes : TreeFamTMEM165
Homologs : HomoloGeneTMEM165
Homology/Alignments : Family Browser (UCSC)TMEM165
Gene fusions - Rearrangements
Fusion : QuiverTMEM165
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM165 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM165
dbVarTMEM165
ClinVarTMEM165
MonarchTMEM165
1000_GenomesTMEM165 
Exome Variant ServerTMEM165
GNOMAD BrowserENSG00000134851
Varsome BrowserTMEM165
ACMGTMEM165 variants
VarityQ9HC07
Genomic Variants (DGV)TMEM165 [DGVbeta]
DECIPHERTMEM165 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM165 
Mutations
ICGC Data PortalTMEM165 
TCGA Data PortalTMEM165 
Broad Tumor PortalTMEM165
OASIS PortalTMEM165 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM165  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM165
Mutations and Diseases : HGMDTMEM165
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM165
DgiDB (Drug Gene Interaction Database)TMEM165
DoCM (Curated mutations)TMEM165
CIViC (Clinical Interpretations of Variants in Cancer)TMEM165
Cancer3DTMEM165
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614726    614727   
Orphanet
DisGeNETTMEM165
MedgenTMEM165
Genetic Testing Registry TMEM165
NextProtQ9HC07 [Medical]
GENETestsTMEM165
Target ValidationTMEM165
Huge Navigator TMEM165 [HugePedia]
ClinGenTMEM165
Clinical trials, drugs, therapy
MyCancerGenomeTMEM165
Protein Interactions : CTDTMEM165
Pharm GKB GenePA147357214
PharosQ9HC07
Clinical trialTMEM165
Miscellaneous
canSAR (ICR)TMEM165
HarmonizomeTMEM165
DataMed IndexTMEM165
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM165
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:35:26 CEST 2021

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