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TMEM165 (transmembrane protein 165)

Identity

Alias_symbol (synonym)TMPT27
TPARL
GDT1
Other aliasCDG2K
FT27
HGNC (Hugo) TMEM165
LocusID (NCBI) 55858
Atlas_Id 74827
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 55395913 and ends at 55426175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DMD (Xp21.2) / TMEM165 (4q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM165   30760
Cards
Entrez_Gene (NCBI)TMEM165  55858  transmembrane protein 165
AliasesCDG2K; FT27; GDT1; TMPT27; 
TPARL
GeneCards (Weizmann)TMEM165
Ensembl hg19 (Hinxton)ENSG00000134851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134851 [Gene_View]  chr4:55395913-55426175 [Contig_View]  TMEM165 [Vega]
ICGC DataPortalENSG00000134851
TCGA cBioPortalTMEM165
AceView (NCBI)TMEM165
Genatlas (Paris)TMEM165
WikiGenes55858
SOURCE (Princeton)TMEM165
Genetics Home Reference (NIH)TMEM165
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM165  -     chr4:55395913-55426175 +  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM165  -     4q12   [Description]    (hg19-Feb_2009)
EnsemblTMEM165 - 4q12 [CytoView hg19]  TMEM165 - 4q12 [CytoView hg38]
Mapping of homologs : NCBITMEM165 [Mapview hg19]  TMEM165 [Mapview hg38]
OMIM614726   614727   
Gene and transcription
Genbank (Entrez)AF132746 AF183409 AF220188 AK026163 AK027162
RefSeq transcript (Entrez)NM_018475
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM165
Cluster EST : UnigeneHs.479766 [ NCBI ]
CGAP (NCI)Hs.479766
Alternative Splicing GalleryENSG00000134851
Gene ExpressionTMEM165 [ NCBI-GEO ]   TMEM165 [ EBI - ARRAY_EXPRESS ]   TMEM165 [ SEEK ]   TMEM165 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM165 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55858
GTEX Portal (Tissue expression)TMEM165
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC07   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC07  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC07
Splice isoforms : SwissVarQ9HC07
PhosPhoSitePlusQ9HC07
Domaine pattern : Prosite (Expaxy)UPF0016 (PS01214)   
Domains : Interpro (EBI)Gdt1   
Domain families : Pfam (Sanger)UPF0016 (PF01169)   
Domain families : Pfam (NCBI)pfam01169   
Conserved Domain (NCBI)TMEM165
DMDM Disease mutations55858
Blocks (Seattle)TMEM165
SuperfamilyQ9HC07
Human Protein AtlasENSG00000134851
Peptide AtlasQ9HC07
HPRD18216
IPIIPI00307572   IPI01011928   IPI00985357   IPI00964248   IPI00964412   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC07
IntAct (EBI)Q9HC07
FunCoupENSG00000134851
BioGRIDTMEM165
STRING (EMBL)TMEM165
ZODIACTMEM165
Ontologies - Pathways
QuickGOQ9HC07
Ontology : AmiGOlysosome  lysosomal membrane  Golgi apparatus  protein N-linked glycosylation  cellular calcium ion homeostasis  endosome membrane  integral component of membrane  early endosome membrane  late endosome membrane  Golgi calcium ion transport  trans-Golgi network membrane  regulation of lysosomal lumen pH  intracellular membrane-bounded organelle  
Ontology : EGO-EBIlysosome  lysosomal membrane  Golgi apparatus  protein N-linked glycosylation  cellular calcium ion homeostasis  endosome membrane  integral component of membrane  early endosome membrane  late endosome membrane  Golgi calcium ion transport  trans-Golgi network membrane  regulation of lysosomal lumen pH  intracellular membrane-bounded organelle  
NDEx NetworkTMEM165
Atlas of Cancer Signalling NetworkTMEM165
Wikipedia pathwaysTMEM165
Orthology - Evolution
OrthoDB55858
GeneTree (enSembl)ENSG00000134851
Phylogenetic Trees/Animal Genes : TreeFamTMEM165
HOVERGENQ9HC07
HOGENOMQ9HC07
Homologs : HomoloGeneTMEM165
Homology/Alignments : Family Browser (UCSC)TMEM165
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM165 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM165
dbVarTMEM165
ClinVarTMEM165
1000_GenomesTMEM165 
Exome Variant ServerTMEM165
ExAC (Exome Aggregation Consortium)TMEM165 (select the gene name)
Genetic variants : HAPMAP55858
Genomic Variants (DGV)TMEM165 [DGVbeta]
DECIPHERTMEM165 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM165 
Mutations
ICGC Data PortalTMEM165 
TCGA Data PortalTMEM165 
Broad Tumor PortalTMEM165
OASIS PortalTMEM165 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM165  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM165
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch TMEM165
DgiDB (Drug Gene Interaction Database)TMEM165
DoCM (Curated mutations)TMEM165 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM165 (select a term)
intoGenTMEM165
Cancer3DTMEM165(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614726    614727   
Orphanet21512   
MedgenTMEM165
Genetic Testing Registry TMEM165
NextProtQ9HC07 [Medical]
TSGene55858
GENETestsTMEM165
Target ValidationTMEM165
Huge Navigator TMEM165 [HugePedia]
snp3D : Map Gene to Disease55858
BioCentury BCIQTMEM165
ClinGenTMEM165
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55858
Chemical/Pharm GKB GenePA147357214
Clinical trialTMEM165
Miscellaneous
canSAR (ICR)TMEM165 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM165
EVEXTMEM165
GoPubMedTMEM165
iHOPTMEM165
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:44 CEST 2017

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