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TMEM167A (transmembrane protein 167A)

Identity

Alias_namesTMEM167
transmembrane protein 167
Alias_symbol (synonym)FLJ30508
MGC23909
Other alias
HGNC (Hugo) TMEM167A
LocusID (NCBI) 153339
Atlas_Id 74828
Location 5q14.2  [Link to chromosome band 5q14]
Location_base_pair Starts at 83052846 and ends at 83077453 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DHX9 (1q25.3) / TMEM167A (5q14.2)SNHG3 (1p35.3) / TMEM167A (5q14.2)TMEM167A (5q14.2) / KCNH7 (2q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM167A   28330
Cards
Entrez_Gene (NCBI)TMEM167A  153339  transmembrane protein 167A
AliasesTMEM167
GeneCards (Weizmann)TMEM167A
Ensembl hg19 (Hinxton)ENSG00000174695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174695 [Gene_View]  chr5:83052846-83077453 [Contig_View]  TMEM167A [Vega]
ICGC DataPortalENSG00000174695
TCGA cBioPortalTMEM167A
AceView (NCBI)TMEM167A
Genatlas (Paris)TMEM167A
WikiGenes153339
SOURCE (Princeton)TMEM167A
Genetics Home Reference (NIH)TMEM167A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM167A  -     chr5:83052846-83077453 -  5q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM167A  -     5q14.2   [Description]    (hg19-Feb_2009)
EnsemblTMEM167A - 5q14.2 [CytoView hg19]  TMEM167A - 5q14.2 [CytoView hg38]
Mapping of homologs : NCBITMEM167A [Mapview hg19]  TMEM167A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI799606 AK000174 AK055070 AK055612 AK172803
RefSeq transcript (Entrez)NM_174909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM167A
Cluster EST : UnigeneHs.355606 [ NCBI ]
CGAP (NCI)Hs.355606
Alternative Splicing GalleryENSG00000174695
Gene ExpressionTMEM167A [ NCBI-GEO ]   TMEM167A [ EBI - ARRAY_EXPRESS ]   TMEM167A [ SEEK ]   TMEM167A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM167A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153339
GTEX Portal (Tissue expression)TMEM167A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBQ9
Splice isoforms : SwissVarQ8TBQ9
PhosPhoSitePlusQ8TBQ9
Domains : Interpro (EBI)Ksh1   
Domain families : Pfam (Sanger)DUF1242 (PF06842)   
Domain families : Pfam (NCBI)pfam06842   
Conserved Domain (NCBI)TMEM167A
DMDM Disease mutations153339
Blocks (Seattle)TMEM167A
SuperfamilyQ8TBQ9
Human Protein AtlasENSG00000174695
Peptide AtlasQ8TBQ9
HPRD14490
IPIIPI00152240   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBQ9
IntAct (EBI)Q8TBQ9
FunCoupENSG00000174695
BioGRIDTMEM167A
STRING (EMBL)TMEM167A
ZODIACTMEM167A
Ontologies - Pathways
QuickGOQ8TBQ9
Ontology : AmiGOGolgi membrane  protein secretion  endomembrane system  integral component of membrane  intracellular transport  
Ontology : EGO-EBIGolgi membrane  protein secretion  endomembrane system  integral component of membrane  intracellular transport  
NDEx NetworkTMEM167A
Atlas of Cancer Signalling NetworkTMEM167A
Wikipedia pathwaysTMEM167A
Orthology - Evolution
OrthoDB153339
GeneTree (enSembl)ENSG00000174695
Phylogenetic Trees/Animal Genes : TreeFamTMEM167A
HOVERGENQ8TBQ9
HOGENOMQ8TBQ9
Homologs : HomoloGeneTMEM167A
Homology/Alignments : Family Browser (UCSC)TMEM167A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM167A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM167A
dbVarTMEM167A
ClinVarTMEM167A
1000_GenomesTMEM167A 
Exome Variant ServerTMEM167A
ExAC (Exome Aggregation Consortium)TMEM167A (select the gene name)
Genetic variants : HAPMAP153339
Genomic Variants (DGV)TMEM167A [DGVbeta]
DECIPHERTMEM167A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM167A 
Mutations
ICGC Data PortalTMEM167A 
TCGA Data PortalTMEM167A 
Broad Tumor PortalTMEM167A
OASIS PortalTMEM167A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM167A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM167A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM167A
DgiDB (Drug Gene Interaction Database)TMEM167A
DoCM (Curated mutations)TMEM167A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM167A (select a term)
intoGenTMEM167A
Cancer3DTMEM167A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM167A
Genetic Testing Registry TMEM167A
NextProtQ8TBQ9 [Medical]
TSGene153339
GENETestsTMEM167A
Target ValidationTMEM167A
Huge Navigator TMEM167A [HugePedia]
snp3D : Map Gene to Disease153339
BioCentury BCIQTMEM167A
ClinGenTMEM167A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153339
Chemical/Pharm GKB GenePA162405909
Clinical trialTMEM167A
Miscellaneous
canSAR (ICR)TMEM167A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM167A
EVEXTMEM167A
GoPubMedTMEM167A
iHOPTMEM167A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:41:44 CEST 2017

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