Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TMEM167B (transmembrane protein 167B)

Identity

Alias_namesC1orf119
chromosome 1 open reading frame 119
Alias_symbol (synonym)AD-020
FLJ90710
Other alias
HGNC (Hugo) TMEM167B
LocusID (NCBI) 56900
Atlas_Id 74829
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109633403 and ends at 109639554 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM167B   30187
Cards
Entrez_Gene (NCBI)TMEM167B  56900  transmembrane protein 167B
AliasesAD-020; C1orf119
GeneCards (Weizmann)TMEM167B
Ensembl hg19 (Hinxton) [Gene_View]  chr1:109633403-109639554 [Contig_View]  TMEM167B [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:109633403-109639554 [Contig_View]  TMEM167B [Vega]
TCGA cBioPortalTMEM167B
AceView (NCBI)TMEM167B
Genatlas (Paris)TMEM167B
WikiGenes56900
SOURCE (Princeton)TMEM167B
Genetics Home Reference (NIH)TMEM167B
Genomic and cartography
GoldenPath hg19 (UCSC)TMEM167B  -     chr1:109633403-109639554 +  1p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TMEM167B  -     1p13.3   [Description]    (hg38-Dec_2013)
EnsemblTMEM167B - 1p13.3 [CytoView hg19]  TMEM167B - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBITMEM167B [Mapview hg19]  TMEM167B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF164793 AK075191 AK291293 AK310192 BC008739
RefSeq transcript (Entrez)NM_020141
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TMEM167B
Cluster EST : UnigeneHs.82933 [ NCBI ]
CGAP (NCI)Hs.82933
Gene ExpressionTMEM167B [ NCBI-GEO ]   TMEM167B [ EBI - ARRAY_EXPRESS ]   TMEM167B [ SEEK ]   TMEM167B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM167B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56900
GTEX Portal (Tissue expression)TMEM167B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRX6
Splice isoforms : SwissVarQ9NRX6
PhosPhoSitePlusQ9NRX6
Domains : Interpro (EBI)DUF1242   
Domain families : Pfam (Sanger)DUF1242 (PF06842)   
Domain families : Pfam (NCBI)pfam06842   
Conserved Domain (NCBI)TMEM167B
DMDM Disease mutations56900
Blocks (Seattle)TMEM167B
SuperfamilyQ9NRX6
Peptide AtlasQ9NRX6
HPRD16474
IPIIPI00024521   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRX6
IntAct (EBI)Q9NRX6
BioGRIDTMEM167B
STRING (EMBL)TMEM167B
ZODIACTMEM167B
Ontologies - Pathways
QuickGOQ9NRX6
Ontology : AmiGOGolgi membrane  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  integral component of membrane  
NDEx NetworkTMEM167B
Atlas of Cancer Signalling NetworkTMEM167B
Wikipedia pathwaysTMEM167B
Orthology - Evolution
OrthoDB56900
Phylogenetic Trees/Animal Genes : TreeFamTMEM167B
HOVERGENQ9NRX6
HOGENOMQ9NRX6
Homologs : HomoloGeneTMEM167B
Homology/Alignments : Family Browser (UCSC)TMEM167B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM167B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM167B
dbVarTMEM167B
ClinVarTMEM167B
1000_GenomesTMEM167B 
Exome Variant ServerTMEM167B
ExAC (Exome Aggregation Consortium)TMEM167B (select the gene name)
Genetic variants : HAPMAP56900
Genomic Variants (DGV)TMEM167B [DGVbeta]
DECIPHER (Syndromes)1:109633403-109639554  
CONAN: Copy Number AnalysisTMEM167B 
Mutations
ICGC Data PortalTMEM167B 
TCGA Data PortalTMEM167B 
Broad Tumor PortalTMEM167B
OASIS PortalTMEM167B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM167B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM167B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM167B
DgiDB (Drug Gene Interaction Database)TMEM167B
DoCM (Curated mutations)TMEM167B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM167B (select a term)
intoGenTMEM167B
Cancer3DTMEM167B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM167B
Genetic Testing Registry TMEM167B
NextProtQ9NRX6 [Medical]
TSGene56900
GENETestsTMEM167B
Huge Navigator TMEM167B [HugePedia]
snp3D : Map Gene to Disease56900
BioCentury BCIQTMEM167B
ClinGenTMEM167B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56900
Chemical/Pharm GKB GenePA162405910
Clinical trialTMEM167B
Miscellaneous
canSAR (ICR)TMEM167B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM167B
EVEXTMEM167B
GoPubMedTMEM167B
iHOPTMEM167B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:48:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.