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TMEM167B (transmembrane protein 167B)

Identity

Alias (NCBI)AD-020
C1orf119
HGNC (Hugo) TMEM167B
HGNC Alias symbAD-020
FLJ90710
HGNC Previous nameC1orf119
HGNC Previous namechromosome 1 open reading frame 119
LocusID (NCBI) 56900
Atlas_Id 74829
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109090764 and ends at 109096934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TMEM167B   30187
Cards
Entrez_Gene (NCBI)TMEM167B    transmembrane protein 167B
AliasesAD-020; C1orf119
GeneCards (Weizmann)TMEM167B
Ensembl hg19 (Hinxton)ENSG00000215717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215717 [Gene_View]  ENSG00000215717 [Sequence]  chr1:109090764-109096934 [Contig_View]  TMEM167B [Vega]
ICGC DataPortalENSG00000215717
TCGA cBioPortalTMEM167B
AceView (NCBI)TMEM167B
Genatlas (Paris)TMEM167B
SOURCE (Princeton)TMEM167B
Genetics Home Reference (NIH)TMEM167B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM167B  -     chr1:109090764-109096934 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM167B  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM167B - 1p13.3 [CytoView hg19]  TMEM167B - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000215717
Genome Data Viewer NCBITMEM167B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF164793 AK075191 AK291293 AK310192 BC008739
RefSeq transcript (Entrez)NM_001322248 NM_020141
Consensus coding sequences : CCDS (NCBI)TMEM167B
Gene ExpressionTMEM167B [ NCBI-GEO ]   TMEM167B [ EBI - ARRAY_EXPRESS ]   TMEM167B [ SEEK ]   TMEM167B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM167B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM167B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56900
GTEX Portal (Tissue expression)TMEM167B
Human Protein AtlasENSG00000215717-TMEM167B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRX6
PhosPhoSitePlusQ9NRX6
Domains : Interpro (EBI)Kish-B    Ksh1   
Domain families : Pfam (Sanger)DUF1242 (PF06842)   
Domain families : Pfam (NCBI)pfam06842   
Conserved Domain (NCBI)TMEM167B
SuperfamilyQ9NRX6
AlphaFold pdb e-kbQ9NRX6   
Human Protein Atlas [tissue]ENSG00000215717-TMEM167B [tissue]
HPRD16474
Protein Interaction databases
DIP (DOE-UCLA)Q9NRX6
IntAct (EBI)Q9NRX6
BioGRIDTMEM167B
STRING (EMBL)TMEM167B
ZODIACTMEM167B
Ontologies - Pathways
QuickGOQ9NRX6
Ontology : AmiGOGolgi membrane  molecular_function  protein binding  Golgi apparatus  integral component of membrane  constitutive secretory pathway  
Ontology : EGO-EBIGolgi membrane  molecular_function  protein binding  Golgi apparatus  integral component of membrane  constitutive secretory pathway  
NDEx NetworkTMEM167B
Atlas of Cancer Signalling NetworkTMEM167B
Wikipedia pathwaysTMEM167B
Orthology - Evolution
OrthoDB56900
GeneTree (enSembl)ENSG00000215717
Phylogenetic Trees/Animal Genes : TreeFamTMEM167B
Homologs : HomoloGeneTMEM167B
Homology/Alignments : Family Browser (UCSC)TMEM167B
Gene fusions - Rearrangements
Fusion : QuiverTMEM167B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM167B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM167B
dbVarTMEM167B
ClinVarTMEM167B
MonarchTMEM167B
1000_GenomesTMEM167B 
Exome Variant ServerTMEM167B
GNOMAD BrowserENSG00000215717
Varsome BrowserTMEM167B
ACMGTMEM167B variants
VarityQ9NRX6
Genomic Variants (DGV)TMEM167B [DGVbeta]
DECIPHERTMEM167B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM167B 
Mutations
ICGC Data PortalTMEM167B 
TCGA Data PortalTMEM167B 
Broad Tumor PortalTMEM167B
OASIS PortalTMEM167B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM167B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM167B
Mutations and Diseases : HGMDTMEM167B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTMEM167B
DgiDB (Drug Gene Interaction Database)TMEM167B
DoCM (Curated mutations)TMEM167B
CIViC (Clinical Interpretations of Variants in Cancer)TMEM167B
Cancer3DTMEM167B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM167B
MedgenTMEM167B
Genetic Testing Registry TMEM167B
NextProtQ9NRX6 [Medical]
GENETestsTMEM167B
Target ValidationTMEM167B
Huge Navigator TMEM167B [HugePedia]
ClinGenTMEM167B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM167B
Protein Interactions : CTDTMEM167B
Pharm GKB GenePA162405910
PharosQ9NRX6
Clinical trialTMEM167B
Miscellaneous
canSAR (ICR)TMEM167B
HarmonizomeTMEM167B
DataMed IndexTMEM167B
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTMEM167B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:25:53 CEST 2021

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