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TMEM168 (transmembrane protein 168)

Identity

Alias_symbol (synonym)DKFZp564C012
FLJ13576
Other alias-
HGNC (Hugo) TMEM168
LocusID (NCBI) 64418
Atlas_Id 74830
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112762382 and ends at 112790423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SYPL1 (7q22.3) / TMEM168 (7q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TMEM168   25826
Cards
Entrez_Gene (NCBI)TMEM168  64418  transmembrane protein 168
Aliases
GeneCards (Weizmann)TMEM168
Ensembl hg19 (Hinxton)ENSG00000146802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146802 [Gene_View]  chr7:112762382-112790423 [Contig_View]  TMEM168 [Vega]
ICGC DataPortalENSG00000146802
TCGA cBioPortalTMEM168
AceView (NCBI)TMEM168
Genatlas (Paris)TMEM168
WikiGenes64418
SOURCE (Princeton)TMEM168
Genetics Home Reference (NIH)TMEM168
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM168  -     chr7:112762382-112790423 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM168  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblTMEM168 - 7q31.1 [CytoView hg19]  TMEM168 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBITMEM168 [Mapview hg19]  TMEM168 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI698728 AK023638 AK025482 AK293311 AK314460
RefSeq transcript (Entrez)NM_001287497 NM_022484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM168
Cluster EST : UnigeneHs.709689 [ NCBI ]
CGAP (NCI)Hs.709689
Alternative Splicing GalleryENSG00000146802
Gene ExpressionTMEM168 [ NCBI-GEO ]   TMEM168 [ EBI - ARRAY_EXPRESS ]   TMEM168 [ SEEK ]   TMEM168 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM168 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64418
GTEX Portal (Tissue expression)TMEM168
Human Protein AtlasENSG00000146802-TMEM168 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0V1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0V1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0V1
Splice isoforms : SwissVarQ9H0V1
PhosPhoSitePlusQ9H0V1
Domains : Interpro (EBI)TMEM168   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM168
DMDM Disease mutations64418
Blocks (Seattle)TMEM168
SuperfamilyQ9H0V1
Human Protein Atlas [tissue]ENSG00000146802-TMEM168 [tissue]
Peptide AtlasQ9H0V1
HPRD07831
IPIIPI00152949   IPI00925266   IPI00925416   IPI00925638   IPI00925908   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0V1
IntAct (EBI)Q9H0V1
FunCoupENSG00000146802
BioGRIDTMEM168
STRING (EMBL)TMEM168
ZODIACTMEM168
Ontologies - Pathways
QuickGOQ9H0V1
Ontology : AmiGOintegral component of membrane  transport vesicle  
Ontology : EGO-EBIintegral component of membrane  transport vesicle  
NDEx NetworkTMEM168
Atlas of Cancer Signalling NetworkTMEM168
Wikipedia pathwaysTMEM168
Orthology - Evolution
OrthoDB64418
GeneTree (enSembl)ENSG00000146802
Phylogenetic Trees/Animal Genes : TreeFamTMEM168
HOVERGENQ9H0V1
HOGENOMQ9H0V1
Homologs : HomoloGeneTMEM168
Homology/Alignments : Family Browser (UCSC)TMEM168
Gene fusions - Rearrangements
Fusion: Tumor Portal TMEM168
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM168 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM168
dbVarTMEM168
ClinVarTMEM168
1000_GenomesTMEM168 
Exome Variant ServerTMEM168
ExAC (Exome Aggregation Consortium)ENSG00000146802
GNOMAD BrowserENSG00000146802
Genetic variants : HAPMAP64418
Genomic Variants (DGV)TMEM168 [DGVbeta]
DECIPHERTMEM168 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM168 
Mutations
ICGC Data PortalTMEM168 
TCGA Data PortalTMEM168 
Broad Tumor PortalTMEM168
OASIS PortalTMEM168 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM168  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTMEM168
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM168
DgiDB (Drug Gene Interaction Database)TMEM168
DoCM (Curated mutations)TMEM168 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM168 (select a term)
intoGenTMEM168
Cancer3DTMEM168(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTMEM168
Genetic Testing Registry TMEM168
NextProtQ9H0V1 [Medical]
TSGene64418
GENETestsTMEM168
Target ValidationTMEM168
Huge Navigator TMEM168 [HugePedia]
snp3D : Map Gene to Disease64418
BioCentury BCIQTMEM168
ClinGenTMEM168
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64418
Chemical/Pharm GKB GenePA147357253
Clinical trialTMEM168
Miscellaneous
canSAR (ICR)TMEM168 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM168
EVEXTMEM168
GoPubMedTMEM168
iHOPTMEM168
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:32:49 CET 2017

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